Evidence map›Paper›PMID 36809283›Full record

ArticlePloS one2023

Comparison of four multilocus sequence typing schemes and amino acid biosynthesis based on genomic analysis of Bacillus subtilis.

Gawon Lee, Sojeong Heo, Tao Kim, Hong-Eun Na, Jong-Hoon Lee, Do-Won Jeong

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Gawon LeeDepartment of Food and Nutrition, Dongduk Women's University, Seoul, Republic of Korea.
Sojeong HeoDepartment of Food and Nutrition, Dongduk Women's University, Seoul, Republic of Korea.
Tao KimDepartment of Food and Nutrition, Dongduk Women's University, Seoul, Republic of Korea.
Hong-Eun NaDepartment of Food and Nutrition, Dongduk Women's University, Seoul, Republic of Korea.
Jong-Hoon LeeDepartment of Food Science and Biotechnology, Kyonggi University, Suwon, Republic of Korea.ORCID 0000-0001-8889-5504
Do-Won JeongDepartment of Food and Nutrition, Dongduk Women's University, Seoul, Republic of Korea.ORCID 0000-0001-6586-748X
Dongduk Women's University · KRKyonggi University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus subtilis, a valuable industrial microorganism used in starter cultures in soybean fermentation, is a species of bacteria with interspecies diversity. Here, four multilocus sequence typing (MLST) schemes developed to assess the diversity of B. subtilis or Bacillus spp. were applied and compared to confirm the interspecies diversity of B. subtilis. In addition, we analyzed correlations between amino acid biosynthesis genes and sequence types (STs); this is important because amino acids are key taste components in fermented foods. On applying the four MLST methods to 38 strains and the type strain of B. subtilis, 30 to 32 STs were identified. The discriminatory power was 0.362-0.964 for the genes used in the MLST methods; the larger the gene, the greater the number of alleles and polymorphic sites. All four MLST methods showed a correlation between STs and strains that do not possess the hutHUIG operon (which contains genes required for the production of glutamate from histidine). This correlation was verified using 168 further genome-sequence strains.

Indexed as

BacillusFermented FoodsBacillus subtilisGenomicsMultilocus Sequence TypingPhylogeny

Identifiers

PMID36809283
PMCPMC9943010
OpenAlexW4321440970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.