Evidence map›Paper›PMID 36809113›Full record

ArticlemBio2023

Genome-Scale CRISPR Screening Reveals Host Factors Required for Ribosome Formation and Viral Replication.

Maikke B Ohlson, Jennifer L Eitson, Alexandra I Wells, Ashwani Kumar, Seoyeon Jang, Chunyang Ni, Chao Xing, Michael Buszczak, John W Schoggins

Open access · goldAbstract read
In one paragraph

Article in mBio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Maikke B OhlsonDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0002-1055-2269
Jennifer L EitsonDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Alexandra I WellsDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Ashwani KumarEugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Seoyeon JangDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Chunyang NiDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Chao XingEugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Michael BuszczakDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
John W SchogginsDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0002-7944-6800
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MELANIE H. COBB · 2010 to 2026
$53.7M
Creating high-resolution, epitope-focused vaccinesDP1AI158125 · NIAID · STANFORD UNIVERSITY · PI KIM, PETER S · 2020 to 2024
$5.9M
A functional evolutionary genetic approach to combat viral infectionDP1AI158124 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI SCHOGGINS, JOHN W. · 2020 to 2024
$5.7M
Discovery of antiviral mechanisms in batsDP2AI117922 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI SCHOGGINS, JOHN W. · 2014 to 2016
$2.6M
Regulation of mRNA translation during germline cyst differentiationR01GM125812 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI BUSZCZAK, MICHAEL · 2018 to 2021
$1.3M
In vivo multiphoton microscope for UT Southwestern Live Cell Imaging FacilityS10RR029731 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI LUBY-PHELPS, KATHERINE J · 2010 to 2010
$1.2M
NCI NIH HHS P30 CA142543NCRR NIH HHS S10 RR029731NIAID NIH HHS AI117922NIAID NIH HHS AI158125NIAID NIH HHS DP1 AI158125NIAID NIH HHS DP2 AI117922NIGMS NIH HHS GM125812NIGMS NIH HHS R01 GM125812
6 · The paper itself

Abstract

Viruses are known to co-opt host machinery for translation initiation, but less is known about which host factors are required for the formation of ribosomes used to synthesize viral proteins. Using a loss-of-function CRISPR screen, we show that synthesis of a flavivirus-encoded fluorescent reporter depends on multiple host factors, including several 60S ribosome biogenesis proteins. Viral phenotyping revealed that two of these factors, SBDS, a known ribosome biogenesis factor, and the relatively uncharacterized protein SPATA5, were broadly required for replication of flaviviruses, coronaviruses, alphaviruses, paramyxoviruses, an enterovirus, and a poxvirus. Mechanistic studies revealed that loss of SPATA5 caused defects in rRNA processing and ribosome assembly, suggesting that this human protein may be a functional ortholog of yeast

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsFlavivirusATPases Associated with Diverse Cellular ActivitiesHumansRibosomesRNA, ViralViral ProteinsVirus ReplicationATPases Associated with Diverse Cellular ActivitiesRNA, ViralSPATA5 protein, humanViral ProteinsflavivirusribosomesRNA virustranslationvirus-host interactions

Identifiers

PMID36809113
PMCPMC10128003
OpenAlexW4321446729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.