Evidence map›Paper›PMID 36808641›Full record

ArticleAdvanced materials (Deerfield Beach, Fla.)2023

User-Controlled 4D Biomaterial Degradation with Substrate-Selective Sortase Transpeptidases for Single-Cell Biology.

Ross C Bretherton, Amanda J Haack, Irina Kopyeva, Fariha Rahman, Jonah D Kern, Darrian Bugg, Ashleigh B Theberge, Jennifer Davis, Cole A DeForest

Open access · greenAbstract read
In one paragraph

Article in Advanced materials (Deerfield Beach, Fla.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Enzymatic Methods for Assembling and Modifying Hydrogel Biomaterials.Regenerative engineering and translational medicine · 2025
    Article
  3. 3D Printing of Enzymatically Softening Hydrogel Biomaterials.Regenerative engineering and translational medicine · 2025
    Article
  4. Suspended Tissue Open Microfluidic Patterning (STOMP).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  5. Article
  6. Article
  7. Suspended Tissue Open Microfluidic Patterning (STOMP).bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Engineered Protein Hydrogels as Biomimetic Cellular Scaffolds.Advanced materials (Deerfield Beach, Fla.) · 2024
    Review
  10. Article
  11. Article
  12. Smart Hydrogels for Tissue Regeneration.Macromolecular bioscience · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Synthetic living materials in cancer biology.Nature reviews bioengineering · 2023
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ross C BrethertonDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0002-9567-8556
Amanda J HaackDepartment of Chemistry, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0002-0066-7556
Irina KopyevaInstitute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.ORCID https://orcid.org/0000-0003-3740-6971
Fariha RahmanDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0001-8014-3025
Jonah D KernDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0002-7365-9442
Darrian BuggCenter for Cardiovascular Biology, University of Washington, Seattle, WA, 98109, USA.ORCID https://orcid.org/0000-0002-0930-6175
Ashleigh B ThebergeDepartment of Urology, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0002-3394-1435
Jennifer DavisDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0003-2380-1321
Cole A DeForestDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.ORCID https://orcid.org/0000-0003-0337-3577
California Institute for Regenerative Medicine · USUniversity of Washington · US

Funding

Biological Mechanisms of Healthy Aging Training GrantT32AG066574 · NIA · UNIVERSITY OF WASHINGTON · PI David J. Marcinek, Jessica E Young · 2020 to 2026
$5.3M
Theberge Admin Supp Undergraduate Summer Research ExperiencesR35GM128648 · NIGMS · UNIVERSITY OF WASHINGTON · PI Ashleigh Brooks Theberge · 2018 to 2026
$4.7M
Integrating Transcriptome Reprogramming Into Cardiac Plasticity Regulatory MechanismsR01HL141187 · NHLBI · UNIVERSITY OF WASHINGTON · PI Jennifer Michelle Davis · 2018 to 2026
$4.0M
Uncovering The Mechanogenomic Basis For Cardiac PlasticityR01HL142624 · NHLBI · UNIVERSITY OF WASHINGTON · PI Jennifer Michelle Davis · 2018 to 2026
$3.8M
Regulators of Myofibroblast State Stability & Fibrotic Responsiveness of the HeartR01HL162229 · NHLBI · UNIVERSITY OF WASHINGTON · PI DAVIS, JENNIFER MICHELLE · 2022 to 2025
$2.5M
Mimicking, Exploiting, and Understanding Biology's Heterogeneity in 4DR35GM138036 · NIGMS · UNIVERSITY OF WASHINGTON · PI Cole A DeForest · 2020 to 2026
$2.3M
Generating multilayered engineered heart tissue patches to mimic physiological thickness and function using open microfluidicsF30HL158030 · NHLBI · UNIVERSITY OF WASHINGTON · PI HAACK, AMANDA JEAN · 2021 to 2025
$192k
NHLBI NIH HHS F30 HL158030NHLBI NIH HHS R01 HL141187NHLBI NIH HHS R01 HL142624NHLBI NIH HHS R01 HL162229NIA NIH HHS T32 AG066574NIGMS NIH HHS R35 GM128648NIGMS NIH HHS R35 GM138036
6 · The paper itself

Abstract

Stimuli-responsive biomaterials show great promise for modeling disease dynamics ex vivo with spatiotemporal control over the cellular microenvironment. However, harvesting cells from such materials for downstream analysis without perturbing their state remains an outstanding challenge in 3/4-dimensional (3D/4D) culture and tissue engineering. In this manuscript, a fully enzymatic strategy for hydrogel degradation that affords spatiotemporal control over cell release while maintaining cytocompatibility is introduced. Exploiting engineered variants of the sortase transpeptidase evolved to recognize and selectively cleave distinct peptide sequences largely absent from the mammalian proteome, many limitations implicit to state-of-the-art methods to liberate cells from gels are sidestepped. It is demonstrated that evolved sortase exposure has minimal impact on the global transcriptome of primary mammalian cells and that proteolytic cleavage proceeds with high specificity; incorporation of substrate sequences within hydrogel crosslinkers permits rapid and selective cell recovery with high viability. In composite multimaterial hydrogels, it is shown that sequential degradation of hydrogel layers enables highly specific retrieval of single-cell suspensions for phenotypic analysis. It is expected that the high bioorthogonality and substrate selectivity of the evolved sortases will lead to their broad adoption as an enzymatic material dissociation cue and that their multiplexed use will enable newfound studies in 4D cell culture.

Indexed as

Biocompatible MaterialsPeptidyl TransferasesAnimalsHydrogelsMammalsPeptidesTissue EngineeringBiocompatible MaterialsHydrogelsPeptidesPeptidyl Transferasesbiomaterialsbioorthogonal chemistrydegradationhydrogelssingle-cell biologysortase

Identifiers

PMID36808641
PMCPMC10175157
OpenAlexW4321367623

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.