Evidence map›Paper›PMID 36808237›Full record

ArticleGenome biology and evolution2023

Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?

Yuta Ohishi, Shogo Arimura, Koya Shimoyama, Kazuyuki Yamada, Shinya Yamauchi, Taku Horie, Susumu Hyodo, Shigehiro Kuraku

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In one paragraph

Article in Genome biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Enigmatic Nodal and Lefty gene repertoire discrepancy: Latent evolutionary history revealed by vertebrate-wide phylogeny.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Yuta OhishiLaboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, Japan.ORCID 0000-0002-0995-9619
Shogo ArimuraLaboratory of Physiology, Atmosphere and Ocean Research Institute, University of Tokyo, Kashiwa, Japan.ORCID 0000-0001-7931-6363
Koya ShimoyamaLaboratory of Physiology, Atmosphere and Ocean Research Institute, University of Tokyo, Kashiwa, Japan.ORCID 0000-0002-5354-8892
Kazuyuki YamadaMarine Science Museum, Tokai University, Shimizu, Japan.
Shinya YamauchiHusbandry Department, Environmental Aquarium Aquamarine Fukushima, Iwaki, Japan.
Taku HorieDepartment of Marine Biology, School of Marine Science and Technology, Tokai University, Shimizu, Shizuoka, Japan.
Susumu HyodoLaboratory of Physiology, Atmosphere and Ocean Research Institute, University of Tokyo, Kashiwa, Japan.ORCID 0000-0001-8146-2386
Shigehiro KurakuLaboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, Japan.ORCID 0000-0003-1464-8388
The University of Tokyo · JPTokai University · JPEnoshima Aquarium · JPNational Institute of Genetics · JPRIKEN Center for Biosystems Dynamics Research · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reproductive modes of vertebrates are classified into two major embryonic nutritional types: yolk deposits (i.e., lecithotrophy) and maternal investment (i.e., matrotrophy). Vitellogenin (VTG), a major egg yolk protein synthesized in the female liver, is one of the molecules relevant to the lecithotrophy-to-matrotrophy shift in bony vertebrates. In mammals, all VTG genes are lost following the lecithotrophy-to-matrotrophy shift, and it remains to be elucidated whether the lecithotrophy-to-matrotrophy shift in nonmammalians is also associated with VTG repertoire modification. In this study, we focused on chondrichthyans (cartilaginous fishes)-a vertebrate clade that underwent multiple lecithotrophy-to-matrotrophy shifts. For an exhaustive search of homologs, we performed tissue-by-tissue transcriptome sequencing for two viviparous chondrichthyans, the frilled shark Chlamydoselachus anguineus and the spotless smooth-hound Mustelus griseus, and inferred the molecular phylogeny of VTG and its receptor very low-density lipoprotein receptor (VLDLR), across diverse vertebrates. As a result, we identified either three or four VTG orthologs in chondrichthyans including viviparous species. We also showed that chondrichthyans had two additional VLDLR orthologs previously unrecognized in their unique lineage (designated as VLDLRc2 and VLDLRc3). Notably, VTG gene expression patterns differed in the species studied depending on their reproductive mode; VTGs are broadly expressed in multiple tissues, including the uterus, in the two viviparous sharks, and in addition to the liver. This finding suggests that the chondrichthyans VTGs do not only function as the yolk nutrient but also as the matrotrophic factor. Altogether, our study indicates that the lecithotrophy-to-matrotrophy shift in chondrichthyans was achieved through a distinct evolutionary process from mammals.

Indexed as

SharksAnimalsBiological EvolutionFemaleMammalsVertebratesVitellogeninsVitellogeninschondrichthyesfrilled sharkspotless smooth-houndvery low-density lipoprotein receptor (VLDLR)vitellogeninviviparityyolk

Identifiers

PMID36808237
PMCPMC10015161
OpenAlexW4321373452

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.