Evidence map›Paper›PMID 36808192›Full record

ArticleEnvironmental microbiology2023

A new dimethylsulfoniopropionate lyase of the cupin superfamily in marine bacteria.

Shu-Yan Wang, Nan Zhang, Zhao-Jie Teng, Xiao-Di Wang, Jonathan D Todd, Yu-Zhong Zhang, Hai-Yan Cao, Chun-Yang Li

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  5. Article
  6. Genome-resolved adaptation strategies ofApplied and environmental microbiology · 2025
    Article
  7. Cloning and expression of the dimethylsulfoniopropionate lyase geneCurrent research in microbial sciences · 2025
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Shu-Yan WangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.
Nan ZhangSchool of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Zhao-Jie TengState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, China.
Xiao-Di WangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.
Jonathan D ToddSchool of Biological Sciences, University of East Anglia, Norwich, UK.
Yu-Zhong ZhangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.ORCID 0000-0002-2017-1005
Hai-Yan CaoFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.
Chun-Yang LiFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.ORCID 0000-0002-1151-4897
Shandong University · CNOcean University of China · CNQilu University of Technology · CNQingdao National Laboratory for Marine Science and Technology · CNUniversity of East Anglia · GB

Funding

Biotechnology and Biological Sciences Research Council BB/X005968
6 · The paper itself

Abstract

Dimethylsulfoniopropionate (DMSP) is a marine organosulfur compound with important roles in stress protection, marine biogeochemical cycling, chemical signalling and atmospheric chemistry. Diverse marine microorganisms catabolize DMSP via DMSP lyases to generate the climate-cooling gas and info-chemical dimethyl sulphide. Abundant marine heterotrophs of the Roseobacter group (MRG) are well known for their ability to catabolize DMSP via diverse DMSP lyases. Here, a new DMSP lyase DddU within the MRG strain Amylibacter cionae H-12 and other related bacteria was identified. DddU is a cupin superfamily DMSP lyase like DddL, DddQ, DddW, DddK and DddY, but shares <15% amino acid sequence identity with these enzymes. Moreover, DddU proteins forms a distinct clade from these other cupin-containing DMSP lyases. Structural prediction and mutational analyses suggested that a conserved tyrosine residue is the key catalytic amino acid residue in DddU. Bioinformatic analysis indicated that the dddU gene, mainly from Alphaproteobacteria, is widely distributed in the Atlantic, Pacific, Indian and polar oceans. For reference, dddU is less abundant than dddP, dddQ and dddK, but much more frequent than dddW, dddY and dddL in marine environments. This study broadens our knowledge on the diversity of DMSP lyases, and enhances our understanding of marine DMSP biotransformation.

Indexed as

Carbon-Sulfur LyasesSulfonium CompoundsAmino Acid SequenceOceans and SeasSulfidesCarbon-Sulfur Lyasesdimethylsulfoniopropionate lyaseSulfidesSulfonium Compounds

Identifiers

PMID36808192
PMCPMC11497337
OpenAlexW4321453094

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.