Evidence map›Paper›PMID 36807787›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

In Situ Analysis of Mitochondrial DNA Synthesis Using Metabolic Labeling Coupled to Fluorescence Microscopy.

John A Smolka, Samantha C Lewis

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
44.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

John A SmolkaDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Samantha C LewisDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA. samlewis@berkeley.edu.
University of California, Berkeley · US

Funding

Systems analysis of mitochondrial genome maintenance in physiological contextR35GM147218 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Samantha C Lewis · 2022 to 2026
$2.1M
Molecular mechanisms of mtDNA inheritanceR00GM129456 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI LEWIS, SAMANTHA C · 2020 to 2022
$747k
Molecular mechanisms of mtDNA inheritanceK99GM129456 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEWIS, SAMANTHA C · 2018 to 2018
$89k
NIGMS NIH HHS K99 GM129456NIGMS NIH HHS R00 GM129456NIGMS NIH HHS R35 GM147218
6 · The paper itself

Abstract

Metabolic labeling with the nucleoside analog 5-ethynyl-2'-deoxyuridine (EdU) enables the selective labeling of DNA synthesis in live cells. Newly synthesized EdU-containing DNA can be covalently modified after extraction or in fixed cells using copper-catalyzed azide-alkyne cycloaddition "click chemistry" reactions, enabling bioconjugation to various substrates including fluorophores for imaging studies. While often used to study nuclear DNA replication, EdU labeling can also be leveraged to detect the synthesis of organellar DNA in the cytoplasm of Eukaryotic cells. In this chapter, we outline methods for the application of EdU labeling to the study of mitochondrial genome synthesis in fixed cultured human cells, using fluorescent labeling and superresolution light microscopy.

Indexed as

DeoxyuridineDNA ReplicationDNA, MitochondrialHumansMicroscopy, FluorescenceNucleosidesDeoxyuridineDNA, MitochondrialNucleosidesClick chemistryEdUMetabolic labelingMitochondrial DNASuperresolution microscopy

Identifiers

PMID36807787
OpenAlexW4321478574

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.