Evidence map›Paper›PMID 36807784›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Mitochondrial DNA Isolation from Plants.

Frédérique Weber-Lotfi, Arnaud Fertet, Rokas Kubilinskas, Clémentine Wallet, José M Gualberto

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Frédérique Weber-LotfiInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Arnaud FertetInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Rokas KubilinskasInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Clémentine WalletInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
José M GualbertoInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France. jose.gualberto@ibmp-cnrs.unistra.fr.
Centre National de la Recherche Scientifique · FRInstitut de Biologie Moléculaire des Plantes · FRUniversité de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For most eukaryotes, sequencing and assembly of the mitochondrial DNA (mtDNA) is possible by starting the analysis from total cellular DNA, but the exploration of the mtDNA of plants is more challenging because of the low copy number, limited sequence conservation, and complex structure of the mtDNA. The very large size of the nuclear genome of many plant species and the very high ploidy of the plastidial genome further complicate the analysis, sequencing, and assembly of plant mitochondrial genomes. An enrichment of mtDNA is therefore necessary. For this, plant mitochondria are purified prior to mtDNA extraction and purification. The relative enrichment in mtDNA can be assessed by qPCR, while the absolute enrichment can be deduced from the proportion of NGS reads mapping to each of the three genomes of the plant cell. Here we present methods for mitochondrial purification and mtDNA extraction applied to different plant species and tissues, and compare the mtDNA enrichment obtained with the different procedures.

Indexed as

DNA, MitochondrialGenome, MitochondrialGenome, PlantMitochondriaPlantsSequence Analysis, DNADNA, MitochondrialArabidopsisLettuceMitochondriamtDNANGS sequencingPlantsqPCR

Identifiers

PMID36807784
OpenAlexW4321478674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.