ArticleGenome biology and evolution2023
Chromosome-scale Genome Assembly of the Yellow Nutsedge (Cyperus esculentus).
Article in Genome biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 25 citations in OpenAlex.
- Transcriptional insights into molecular events occurring during tuber maturation of tigernut (Cyperus esculentus L.).Functional & integrative genomics · 2026Article
- Anatomical and Transcriptomic Analyses Revealed the Key Genes Associated with Tuber Expansion inGenes · 2026Article
- Cytological and Ploidy Analyses Revealing Fertility Defects of CultivarPlants (Basel, Switzerland) · 2025Article
- The transcription factor CeWRI3 functions in TAG accumulation through activating CeOLE2 in Cyperus esculentus.Plant cell reports · 2025Article
- Hazelnut allergome overview and Cor a gRNAs identification.BMC plant biology · 2025Article
- Insights into membrane-bound fatty acid desaturase genes in tigernut (Cyperus esculentus L.), an oil-rich tuber plant in Cyperaceae.BMC plant biology · 2025Article
- Insights into the Stearoyl-Acyl Carrier Protein Desaturase (SAD) Family in Tigernut (Plants (Basel, Switzerland) · 2025Article
- Understanding the triacylglycerol-based carbon anabolic differentiation in Cyperus esculentus and Cyperus rotundus developing tubers via transcriptomic and metabolomic approaches.BMC plant biology · 2024Article
- The genome of Eleocharis vivipara elucidates the genetics of CJournal of integrative plant biology · 2024Article
- Insights into Genes Encoding LEA_1 Domain-Containing Proteins inPlants (Basel, Switzerland) · 2024Article
- Chromosome-Scale Genome Assembly for Soft-Stem Bulrush (Schoenoplectus tabernaemontani) Confirms a Clade-Specific Whole-Genome Duplication in Cyperaceae.Genome biology and evolution · 2024Article
- Genome-wide identification and molecular evolution of Dof transcription factors in Cyperus esculentus.BMC genomics · 2024Article
- Current status of community resources and priorities for weed genomics research.Genome biology · 2024Review
- RNA-Seq Reveals That Multiple Pathways Are Involved in Tuber Expansion in Tiger Nuts (International journal of molecular sciences · 2024Article
- TIP aquaporins in Cyperus esculentus: genome-wide identification, expression profiles, subcellular localizations, and interaction patterns.BMC plant biology · 2024Article
- Genome Assembly and Microsatellite Marker Development Using Illumina and PacBio Sequencing in theGenes · 2023Article
- Molecular characterization of oleosin genes in Cyperus esculentus, a Cyperaceae plant producing oil in underground tubers.Plant cell reports · 2023Article
Corrections and comments
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Authors and funding
13 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The yellow nutsedge (Cyperus esculentus L. 1753) is an unconventional oil plant with oil-rich tubers, and a potential alternative for traditional oil crops. Here, we reported the first high-quality and chromosome-level genome assembly of the yellow nutsedge generated by combining PacBio HiFi long reads, Novaseq short reads, and Hi-C data. The final genome size is 225.6 Mb with an N50 of 4.3 Mb. More than 222.9 Mb scaffolds were anchored to 54 pseudochromosomes with a BUSCO score of 96.0%. We identified 76.5 Mb (33.9%) repetitive sequences across the genome. A total of 23,613 protein-coding genes were predicted in this genome, of which 22,847 (96.8%) were functionally annotated. A whole-genome duplication event was found after the divergence of Carex littledalei and Rhynchospora breviuscula, indicating the rich genetic resources of this species for adaptive evolution. Several significantly enriched GO terms were related to invasiveness of the yellow nutsedge, which may explain its plastic adaptability. In addition, several enriched Kyoto Encyclopedia of Genes and Genomes pathways and expanded gene families were closely related with substances in tubers, partially explaining the genomic basis of characteristics of this oil-rich tuber.
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