Evidence map›Paper›PMID 36807061›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Mapping Nucleosome Location Using FS-Seq.

Barry Milavetz, Brenna Hanson, Kincaid Rowbotham, Jacob Haugen

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Barry MilavetzDepartment of Biomedical Sciences, School of Medicine, University of North Dakota, Grand Forks, ND, USA. barry.milavetz@UND.edu.
Brenna HansonDepartment of Biomedical Sciences, School of Medicine, University of North Dakota, Grand Forks, ND, USA.
Kincaid RowbothamDepartment of Biomedical Sciences, School of Medicine, University of North Dakota, Grand Forks, ND, USA.
Jacob HaugenDepartment of Biomedical Sciences, School of Medicine, University of North Dakota, Grand Forks, ND, USA.
University of North Dakota · US

Funding

EPIGENETIC REGULATION OF THE ESTABLISHMENT OF AN SV40 INFECTIONR03AI142011 · NIAID · UNIVERSITY OF NORTH DAKOTA · PI MILAVETZ, BARRY IRA · 2019 to 2020
$139k
NIAID NIH HHS R03 AI142011
6 · The paper itself

Abstract

The organization of nucleosomes in eukaryotic chromatin is thought to play a critical role in the regulation of the biological function of the chromatin. Because of this potential role in regulation, a number of techniques have been developed, which combine chromatin fragmentation around nucleosomes with next-generation sequencing to map the location of nucleosomes in chromatin. In this section, a procedure using a kit from New England Biolabs (NEB NEXT Ultra II FS DNA library prep Kit) to fragment chromatin in preparation for next-generation sequencing is described and compared to other available procedures for mapping nucleosome location.

Indexed as

ChromatinNucleosomesChromatinNucleosomesChromatinNGSNucleosomesPhasingSequencing

Identifiers

PMID36807061
OpenAlexW4321478615

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.