Evidence map›Paper›PMID 36806111›Full record

ArticleActa parasitologica2023

Distribution and Phylogenetic Analysis of Subtypes and Alleles of Blastocystis sp. in the Stool Samples Collected from Patients with Gastrointestinal Complaints in İzmir, Turkey.

Mehmet Aykur, Cansu Calıskan Kurt, Derya Dirim Erdogan, Cıgır Biray Avcı, Rukiye Vardar, Sohret Aydemir, Nogay Girginkardesler, Cumhur Gunduz, Hande Dagci

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In one paragraph

Article in Acta parasitologica, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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  6. Systematic Review and Meta-Analysis: Epidemiology of HumanTropical medicine and infectious disease · 2023
    Review
  7. Frequency and Subtypes ofIranian journal of parasitology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Mehmet AykurDepartment of Parasitology, Tokat Gaziosmanpasa University, Faculty of Medicine, PO Box 60030, Tokat, Turkey. mehmetaykur@gmail.com.ORCID http://orcid.org/0000-0002-6100-1037
Cansu Calıskan KurtDepartment of Medical Biology, Ege University, Faculty of Medicine, İzmir, Turkey.
Derya Dirim ErdoganDepartment of Parasitology, Ege University, Faculty of Medicine, İzmir, Turkey.
Cıgır Biray AvcıDepartment of Medical Biology, Ege University, Faculty of Medicine, İzmir, Turkey.
Rukiye VardarDepartment of Gastroenterology, Ege University, Faculty of Medicine, İzmir, Turkey.
Sohret AydemirDepartment of Microbiology, Ege University, Faculty of Medicine, İzmir, Turkey.
Nogay GirginkardeslerDepartment of Parasitology, Celal Bayar University, Faculty of Medicine, Manisa, Turkey.
Cumhur GunduzDepartment of Medical Biology, Ege University, Faculty of Medicine, İzmir, Turkey.
Hande DagciDepartment of Parasitology, Ege University, Faculty of Medicine, İzmir, Turkey.
Ege University · TRManisa Celal Bayar University · TRTokat Gaziosmanpaşa Üniversitesi · TR

Funding

Ege University Research Foundation 13-TIP-092
6 · The paper itself

Abstract

purposeBlastocystis sp. is one of the most prevalent intestinal protozoa found in humans and many other animals. The present study aimed to examine the distribution and genetic diversity of Blastocystis sp. in stool samples from patients with gastrointestinal complaints in İzmir, Turkey.

methodsAll stool samples of 439 patients with gastrointestinal complaints were examined by native-Lugol and trichrome staining. To investigate the presence of Blastocystis sp. in stool samples, DNA was isolated, and PCR was performed with the barcode region in the SSU rRNA gene. PCR positive samples were sequenced to identify subtypes and alleles of Blastocystis sp.

resultsThe prevalence of Blastocystis sp. was found to be 16.6% (73/439) in patients with gastrointestinal complaints in İzmir, Turkey. Three different Blastocystis sp. subtypes were identified. ST3 (28/55; 51.0%) was the most common subtype followed by ST2 (19/55; 34.5%) and ST1 (8/55; 14.5%). Itching and diarrhea were the most prominent clinical symptoms in Blastocystis sp. positive patients. When clinical symptoms and subtypes were compared, diarrhea was found in 62.5%, 47.4%, and 46.4% of patients with ST1, ST2, and ST3 subtypes, respectively. In addition, itching was found in 37.5%, 32.1%, and 21.1% of patients with ST1, ST3, and ST2, respectively. Six distinct alleles were identified by allele analysis of Blastocystis 18S rRNA gene: allele 4 for ST1, alleles 9, 11, and 12 for ST2, and alleles 34 and 36 for ST3. In this study, Blastocystis sp. was detected in 16 of 21 districts, including the central and rural districts of İzmir. Although ST1 was detected in central districts, it was not found in rural districts.

conclusionThis study provides comprehensive data on the prevalence and molecular epidemiology of the genetic diversity at the level of subtypes and alleles of Blastocystis sp. in different districts of İzmir province in Turkey. To the best of our knowledge, this is the first study which evaluates the distribution of subtypes and alleles of Blastocystis sp. according to PCR and SSU rRNA gene sequencing in patients with gastrointestinal complaints in different districts of İzmir province in Turkey.

Indexed as

BlastocystisBlastocystis InfectionsAllelesAnimalsDiarrheaDNA, ProtozoanFecesGenetic VariationHumansInterleukin-1 Receptor-Like 1 ProteinPhylogenyTurkeyDNA, ProtozoanInterleukin-1 Receptor-Like 1 ProteinAllelesBlastocystis sp.Gastrointestinal complaintsİzmir, TurkeyPatientsSubtyping

Identifiers

PMID36806111
OpenAlexW4321436321

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.