Evidence map›Paper›PMID 36805209›Full record

ArticleGenome biology and evolution2023

Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists.

Mariana Rius, Joshua S Rest, Gina V Filloramo, Anna M G Novák Vanclová, John M Archibald, Jackie L Collier

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Article in Genome biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. TransgenicMarine drugs · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mariana RiusSchool of Marine and Atmospheric Sciences, Stony Brook University.ORCID 0000-0001-6342-2559
Joshua S RestDepartment of Ecology and Evolution, Stony Brook University.ORCID 0000-0002-9582-1041
Gina V FilloramoDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
Anna M G Novák VanclováFaculty of Science, Charles University, BIOCEV, Vestec, Czechia.
John M ArchibaldDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.ORCID 0000-0001-7255-780X
Jackie L CollierSchool of Marine and Atmospheric Sciences, Stony Brook University.ORCID 0000-0001-8774-5715

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thraustochytrids (phylum: Labyrinthulomycota) are nonphotosynthetic marine protists. Some thraustochytrids have crtIBY, a trifunctional fusion gene encoding a protein capable of β-carotene biosynthesis from geranylgeranyl pyrophosphate. Here we show that crtIBY is essential in, and encodes the sole pathway for, carotenoid biosynthesis in the thraustochytrid Aurantiochytrium limacinum ATCC MYA-1381. We explore the evolutionary origins of CrtIBY and discover that the closest related protein domains are present in a small but diverse group of other heterotrophic protists, including the apusomonad Thecamonas trahens and the dinoflagellates Oxyrrhis marina and Noctiluca scintillans. Each organism within this cluster also contains one or more β-carotene 15-15' oxygenase genes (blh and rpe65), suggesting that the acquisition of β-carotene biosynthesis genes may have been related to the production of retinal. Our findings support a novel origin of eukaryotic (apo)carotenoid biosynthesis by horizontal gene transfer from Actinobacteria, Bacteroidetes, and/or Archaea. This reveals a remarkable case of parallel evolution of eukaryotic (apo)carotenogenesis in divergent protistan lineages by repeated gene transfers.

Indexed as

CarotenoidsStramenopilesBacteriabeta CaroteneGene Transfer, Horizontalbeta CaroteneCarotenoidscarotenoid oxygenaselycopene cyclasephylogeneticsphytoene desaturasephytoene synthasethraustochytrids

Identifiers

PMID36805209
PMCPMC10016063

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LicenceCC BY
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reference markers read4
identifiers read2
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.