Evidence map›Paper›PMID 36805026›Full record

ArticleMolecular cell2023

Structural snapshots of R-loop formation by a type I-C CRISPR Cascade.

Roisin E O'Brien, Jack P K Bravo, Delisa Ramos, Grace N Hibshman, Jacquelyn T Wright, David W Taylor

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Roisin E O'BrienInterdisciplinary Life Sciences Graduate Programs, University of Texas at Austin, Austin, TX 78712, USA.
Jack P K BravoDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.
Delisa RamosDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.
Grace N HibshmanInterdisciplinary Life Sciences Graduate Programs, University of Texas at Austin, Austin, TX 78712, USA.
Jacquelyn T WrightInterdisciplinary Life Sciences Graduate Programs, University of Texas at Austin, Austin, TX 78712, USA.
David W TaylorInterdisciplinary Life Sciences Graduate Programs, University of Texas at Austin, Austin, TX 78712, USA; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA; Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712, USA; LIVESTRONG Cancer Institutes, Dell Medical School, University of Texas at Austin, Austin, TX 78712, USA. Electronic address: dtaylor@utexas.edu.
The University of Texas at Austin · USLivestrong Foundation · US

Funding

Imaging macromolecular machines in gene regulationR35GM138348 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI TAYLOR, DAVID W · 2020 to 2024
$1.9M
NIGMS NIH HHS R35 GM138348
6 · The paper itself

Abstract

Type I CRISPR-Cas systems employ multi-subunit Cascade effector complexes to target foreign nucleic acids for destruction. Here, we present structures of D. vulgaris type I-C Cascade at various stages of double-stranded (ds)DNA target capture, revealing mechanisms that underpin PAM recognition and Cascade allosteric activation. We uncover an interesting mechanism of non-target strand (NTS) DNA stabilization via stacking interactions with the "belly" subunits, securing the NTS in place. This "molecular seatbelt" mechanism facilitates efficient R-loop formation and prevents dsDNA reannealing. Additionally, we provide structural insights into how two anti-CRISPR (Acr) proteins utilize distinct strategies to achieve a shared mechanism of type I-C Cascade inhibition by blocking PAM scanning. These observations form a structural basis for directional R-loop formation and reveal how different Acr proteins have converged upon common molecular mechanisms to efficiently shut down CRISPR immunity.

Indexed as

CRISPR-Associated ProteinsR-Loop StructuresCRISPR-Cas SystemsDNAModels, MolecularProtein ConformationCRISPR-Associated ProteinsDNAanti-CRISPRsCascadesCRISPR

Identifiers

PMID36805026
PMCPMC10026943
OpenAlexW4321116795

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.