Evidence map›Paper›PMID 36803868›Full record

ArticleMicrobiome2023

Sputum bacterial load and bacterial composition correlate with lung function and are altered by long-term azithromycin treatment in children with HIV-associated chronic lung disease.

Regina E Abotsi, Felix S Dube, Andrea M Rehman, Shantelle Claassen-Weitz, Yao Xia, Victoria Simms, Kilaza S Mwaikono, Sugnet Gardner-Lubbe, Grace McHugh, Lucky G Ngwira and 6 more

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Microbiome, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Characterization ofMicrobial genomics · 2026
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 9 countries.

Regina E AbotsiDepartment of Molecular and Cell Biology & Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Felix S DubeDepartment of Molecular and Cell Biology & Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Andrea M RehmanInternational Statistics and Epidemiology Group, London School of Hygiene and Tropical Medicine, London, UK.
Shantelle Claassen-WeitzDivision of Medical Microbiology, Department of Pathology, University of Cape Town, Cape Town, South Africa.
Yao XiaMarshall Centre, Division of Infection and Immunity, School of Biomedical Sciences, University of Western Australia, Perth, Australia.
Victoria SimmsInternational Statistics and Epidemiology Group, London School of Hygiene and Tropical Medicine, London, UK.
Kilaza S MwaikonoComputational Biology Group and H3ABioNet, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa.
Sugnet Gardner-LubbeDepartment of Statistics and Actuarial Science, Stellenbosch University, Stellenbosch, South Africa.
Grace McHughBiomedical Research and Training Institute, Harare, Zimbabwe.
Lucky G NgwiraMalawi-Liverpool Wellcome Trust Clinical Research Programme, Blantyre, Malawi.
Brenda Kwambana-AdamsNIHR Global Health Research Unit on Mucosal Pathogens, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK.
Robert S HeydermanNIHR Global Health Research Unit on Mucosal Pathogens, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK.
Jon Ø OdlandDepartment of Community Medicine, University of Tromsø, Tromsø, Norway.
Rashida A FerrandBiomedical Research and Training Institute, Harare, Zimbabwe.
Mark P NicolDivision of Medical Microbiology, Department of Pathology, University of Cape Town, Cape Town, South Africa. Mark.Nicol@uwa.edu.au.
BREATHE study team
University of Cape Town · ZALondon School of Hygiene & Tropical Medicine · GBUniversity College London · GBBiomedical Research and Training Institute · ZWNational Research University Higher School of Economics · RUStellenbosch University · ZAThe University of Western Australia · AUUniversity of Liverpool · GB

Funding

The nasopharyngeal microbiota of African children and lower respiratory tract infectionU54HG009824 · NHGRI · UNIVERSITY OF CAPE TOWN · PI NICOL, MARK PATRICK, ZAR, HEATHER JOY · 2017 to 2021
$2.9M
The nasopharyngeal microbiome and respiratory disease in African childrenU01AI110466 · NIAID · UNIVERSITY OF CAPE TOWN · PI NICOL, MARK PATRICK, ZAR, HEATHER JOY · 2013 to 2016
$1.4M
Department of HealthMedical Research Council MR/R010161/1NHGRI NIH HHS U54 HG009824NIAID NIH HHS U01 AI110466Wellcome Trust 206316/Z/17/ZWellcome Trust 206316_Z_17_Z
6 · The paper itself

Abstract

backgroundLong-term azithromycin (AZM) treatment reduces the frequency of acute respiratory exacerbation in children and adolescents with HIV-associated chronic lung disease (HCLD). However, the impact of this treatment on the respiratory bacteriome is unknown.

methodAfrican children with HCLD (defined as forced expiratory volume in 1 s z-score (FEV1z) less than - 1.0 with no reversibility) were enrolled in a placebo-controlled trial of once-weekly AZM given for 48-weeks (BREATHE trial). Sputum samples were collected at baseline, 48 weeks (end of treatment) and 72 weeks (6 months post-intervention in participants who reached this timepoint before trial conclusion). Sputum bacterial load and bacteriome profiles were determined using 16S rRNA gene qPCR and V4 region amplicon sequencing, respectively. The primary outcomes were within-participant and within-arm (AZM vs placebo) changes in the sputum bacteriome measured across baseline, 48 weeks and 72 weeks. Associations between clinical or socio-demographic factors and bacteriome profiles were also assessed using linear regression.

resultsIn total, 347 participants (median age: 15.3 years, interquartile range [12.7-17.7]) were enrolled and randomised to AZM (173) or placebo (174). After 48 weeks, participants in the AZM arm had reduced sputum bacterial load vs placebo arm (16S rRNA copies/µl in log

conclusionsAZM treatment preserved sputum bacterial diversity and reduced the relative abundances of the HCLD-associated genera Haemophilus and Moraxella. These bacteriological effects were associated with improvement in lung function and may account for reduced respiratory exacerbations associated with AZM treatment of children with HCLD. Video Abstract.

Indexed as

HIV InfectionsLung DiseasesAdolescentAnti-Bacterial AgentsAzithromycinBacteriaBacterial LoadChildHaemophilusHumansLungMoraxellaRNA, Ribosomal, 16SSputumAnti-Bacterial AgentsAzithromycinRNA, Ribosomal, 16SAdolescentsAfricaBacteriomeFEV1zHaemophilusHIVMicrobiomeMoraxellaObliterative bronchiolitis

Identifiers

PMID36803868
PMCPMC9940396
OpenAlexW4321350332

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.