Evidence map›Paper›PMID 36803080›Full record

ArticleCirculation. Genomic and precision medicine2023

Evidence-Based Assessment of Congenital Heart Disease Genes to Enable Returning Results in a Genomic Study.

Emily L Griffin, Shannon N Nees, Sarah U Morton, Julia Wynn, Nihir Patel, Vaidehi Jobanputra, Scott Robinson, Stephanie M Kochav, Alice Tao, Carli Andrews and 20 more

Open access · bronzeAbstract read
In one paragraph

Article in Circulation. Genomic and precision medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Who will be our adult congenital heart disease patient tomorrow?European heart journal supplements : journal of the European Society of Cardiology · 2026
    Article
  4. Human mutation · 2026
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 13 institutions in 2 countries.

Emily L Griffin *Department of Pediatrics (E.L.G., J.W., S.R., C.A., W.K.C.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0001-5193-2041
Shannon N Nees *Nemours Cardiac Center, Nemours Children's Hospital, Wilmington, DE (S.N.N).ORCID 0000-0003-4046-3942
Sarah U Morton *Division of Newborn Medicine, Department of Medicine (S.U.M.), Boston Children's Hospital, Boston, MA.ORCID 0000-0002-7816-2646
Julia WynnDepartment of Pediatrics (E.L.G., J.W., S.R., C.A., W.K.C.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0002-5220-6022
Nihir PatelMindich Child Health & Development Institute (N.P., B.D.G.), Icahn School of Medicine at Mount Sinai, New York, NY.ORCID 0000-0002-4253-3097
Vaidehi JobanputraDepartment of Pathology and Cell Biology (V.J.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0003-0962-7873
Scott RobinsonDepartment of Pediatrics (E.L.G., J.W., S.R., C.A., W.K.C.), Columbia University Irving Medical Center, New York, NY.
Stephanie M KochavDivision of Cardiology (S.M.K), Columbia University Irving Medical Center, New York, NY.
Alice TaoDivision of Cardiothoracic Surgery (A.T), Children's Hospital of Los Angeles, Los Angeles, CA.ORCID 0000-0002-5133-8242
Carli AndrewsDepartment of Pediatrics (E.L.G., J.W., S.R., C.A., W.K.C.), Columbia University Irving Medical Center, New York, NY.
Nancy CrossDivision of Pediatric Cardiology (N.C.), Yale School of Medicine, New Haven, CT.
Judith GevaDepartment of Cardiology (J.G., J.W.N.), Boston Children's Hospital, Boston, MA.
Kristen LanzilottaDivision of Cardiology, Department of Pediatrics (K.L, A.R., E.G.), The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0001-8281-6043
Alyssa RitterDivision of Cardiology, Department of Pediatrics (K.L, A.R., E.G.), The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0003-4735-5223
Eileen TaillieDepartment of Pediatrics, Golisano Children's Hospital, University of Rochester Medical Center, Rochester, NY (E.T. and G.A.P).ORCID 0000-0003-2771-1008
Alexandra ThompsonVagelos College of Physicians and Surgeons (A.T.), Columbia University Irving Medical Center, New York, NY.
Chris Meyer
Rachel AkersDivision of Biostatistics & Epidemiology (R.A., E.C.K.), Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0002-1310-0866
Eileen C KingDivision of Biostatistics & Epidemiology (R.A., E.C.K.), Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
James F CnotaThe Heart Institute (J.F.C.), Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0001-6732-8949
Richard W KimPediatric Cardiac Surgery (R.W.K), Children's Hospital of Los Angeles, Los Angeles, CA.ORCID 0000-0003-3326-6916
George A PorterDepartment of Pediatrics, Golisano Children's Hospital, University of Rochester Medical Center, Rochester, NY (E.T. and G.A.P).ORCID 0000-0003-0726-9988
Martina BruecknerDepartment of Genetics and Pediatrics (M.B.), Yale School of Medicine, New Haven, CT.
Christine E SeidmanDepartment of Genetics (C.E.S), Harvard Medical School, Boston, MA.ORCID 0000-0001-6380-1209
Yufeng ShenDepartments of Systems Biology & Biomedical Informatics, Columbia University, New York, NY (Y.S.).ORCID 0000-0002-1299-5979
Bruce D GelbDepartments of Pediatrics and Genetics & Genomic Sciences (B.D.G.), Icahn School of Medicine at Mount Sinai, New York, NY.ORCID 0000-0001-8527-5027
Elizabeth GoldmuntzDivision of Cardiology, Department of Pediatrics (K.L, A.R., E.G.), The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0003-2936-4396
Jane W NewburgerDepartment of Cardiology (J.G., J.W.N.), Boston Children's Hospital, Boston, MA.ORCID 0000-0002-7794-9017
Amy E RobertsDivision of Genetics, Department of Pediatrics (A.E.R.), Boston Children's Hospital, Boston, MA.ORCID 0000-0001-5827-8521
Wendy K ChungDepartment of Pediatrics (E.L.G., J.W., S.R., C.A., W.K.C.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0003-3438-5685
Columbia University Irving Medical Center · USBoston Children's Hospital · USChildren's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USChildren's Hospital of Los Angeles · USGolisano Children's Hospital · USYale University · USB.E. Meyers & Co (United States) · USBrigham and Women's Hospital · USChild Health and Development Institute · USColumbia University · USIcahn School of Medicine at Mount Sinai · USNemours Children's Health System · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Administrative Coordinating Center: Cardiovascular Development and Pediatric Cardiac Genomics ConsortiaU01HL131003 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI CNOTA, JAMES, OLLBERDING, NICHOLAS J · 2016 to 2024
$54.8M
NHLBI Pediatric Translational Consortium Administrative Coordinating CenterU01HL098188 · NHLBI · NEW ENGLAND RESEARCH INSTITUTES, INC. · PI HAMZA, TAYE, MILLER, JULIE ELAINE · 2009 to 2015
$41.3M
POSTDOCTORAL TRAINING IN CARDIOVASCULAR DISEASET32HL007854 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Marwah Abdalla, Michael Argenziano · 1996 to 2026
$14.7M
Genomic Effects on Right Ventricular Function, Clinical Features and Outcomes in CHDU01HL098147 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI NEWBURGER, JANE W., ROBERTS, AMY E · 2009 to 2024
$6.7M
Genetic determinants of human heterotaxy and aortic arch malformationU01HL098162 · NHLBI · YALE UNIVERSITY · PI BRUECKNER, MARTINA, GRUBER, PETER J · 2009 to 2024
$5.9M
The Genetic Basis of Conotruncal DefectsU01HL098153 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI GOLDMUNTZ, ELIZABETH · 2009 to 2014
$4.3M
Genomic studies of secundum atrial septal defectsU01HL098123 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GELB, BRUCE D · 2009 to 2014
$4.1M
Molecular approaches to gene identification in congenital heart diseaseU01HL098163 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CHUNG, WENDY K, WARBURTON, DOROTHY P. · 2009 to 2014
$3.9M
Genetics of Hypoplastic Left Heart SyndromeUM1HL128761 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BERNSTEIN, DANIEL, SRIVASTAVA, DEEPAK · 2015 to 2019
$2.5M
The Genomic Basis of Congenital Heart Disease and Neurodevelopmental OutcomesUM1HL098147 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI NEWBURGER, JANE W., ROBERTS, AMY E · 2015 to 2019
$2.4M
Identifying and applying genetic variation relevant to clinical outcomes for individuals with congenital heart diseaseU01HL153009 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CHUNG, WENDY K, GELB, BRUCE D · 2020 to 2024
$2.3M
NCATS NIH HHS UL1 TR001863NHLBI NIH HHS T32 HL007854NHLBI NIH HHS U01 HL098123NHLBI NIH HHS U01 HL098147NHLBI NIH HHS U01 HL098153NHLBI NIH HHS U01 HL098162NHLBI NIH HHS U01 HL098163NHLBI NIH HHS U01 HL098188NHLBI NIH HHS U01 HL131003NHLBI NIH HHS U01 HL153009NHLBI NIH HHS UM1 HL098123NHLBI NIH HHS UM1 HL098147NHLBI NIH HHS UM1 HL098162NHLBI NIH HHS UM1 HL128711NHLBI NIH HHS UM1 HL128761NHLBI NIH HHS UM1 HL172717
6 · The paper itself

Abstract

backgroundCongenital heart disease (CHD) is the most common major congenital anomaly and causes significant morbidity and mortality. Epidemiologic evidence supports a role of genetics in the development of CHD. Genetic diagnoses can inform prognosis and clinical management. However, genetic testing is not standardized among individuals with CHD. We sought to develop a list of validated CHD genes using established methods and to evaluate the process of returning genetic results to research participants in a large genomic study.

methodsTwo-hundred ninety-five candidate CHD genes were evaluated using a ClinGen framework. Sequence and copy number variants involving genes in the CHD gene list were analyzed in Pediatric Cardiac Genomics Consortium participants. Pathogenic/likely pathogenic results were confirmed on a new sample in a clinical laboratory improvement amendments-certified laboratory and disclosed to eligible participants. Adult probands and parents of probands who received results were asked to complete a post-disclosure survey.

resultsA total of 99 genes had a strong or definitive clinical validity classification. Diagnostic yields for copy number variants and exome sequencing were 1.8% and 3.8%, respectively. Thirty-one probands completed clinical laboratory improvement amendments-confirmation and received results. Participants who completed postdisclosure surveys reported high personal utility and no decision regret after receiving genetic results.

conclusionsThe application of ClinGen criteria to CHD candidate genes yielded a list that can be used to interpret clinical genetic testing for CHD. Applying this gene list to one of the largest research cohorts of CHD participants provides a lower bound for the yield of genetic testing in CHD.

Indexed as

Heart Defects, CongenitalAdultChildDNA Copy Number VariationsGenetic TestingGenomicsHeartHumansClinGencongenital heart diseasegene curation

Identifiers

PMID36803080
PMCPMC10121846
OpenAlexW4321456752

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.