Evidence map›Paper›PMID 36802379›Full record

ArticlePLoS genetics2023

Escape from X-inactivation in twins exhibits intra- and inter-individual variability across tissues and is heritable.

Antonino Zito, Amy L Roberts, Alessia Visconti, Niccolo' Rossi, Rosa Andres-Ejarque, Stefano Nardone, Julia S El-Sayed Moustafa, Mario Falchi, Kerrin S Small

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Variable expression ofProceedings of the National Academy of Sciences of the United States of America · 2024
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  18. The impact of chromosomal sex on cardiometabolic health and disease.Trends in endocrinology and metabolism: TEM · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Antonino ZitoDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.ORCID 0000-0003-1931-984X
Amy L RobertsDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.ORCID 0000-0002-5704-9249
Alessia ViscontiDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.ORCID 0000-0003-4144-2019
Niccolo' RossiDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.ORCID 0000-0002-8285-7627
Rosa Andres-EjarqueSt John's Institute of Dermatology, Faculty of Life Science & Medicine, King's College London, London, United Kingdom.
Stefano NardoneDivision of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0002-9317-4784
Julia S El-Sayed MoustafaDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.ORCID 0000-0001-6963-6654
Mario FalchiDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.
Kerrin S SmallDepartment of Twin Research & Genetic Epidemiology, King's College London, London, United Kingdom.ORCID 0000-0003-4566-0005
King's College London · GBBeth Israel Deaconess Medical Center · US

Funding

Medical Research Council MR/L016311/1Medical Research Council MR/R023131/1Wellcome Trust
6 · The paper itself

Abstract

X-chromosome inactivation (XCI) silences one X in female cells to balance sex-differences in X-dosage. A subset of X-linked genes escape XCI, but the extent to which this phenomenon occurs and how it varies across tissues and in a population is as yet unclear. To characterize incidence and variability of escape across individuals and tissues, we conducted a transcriptomic study of escape in adipose, skin, lymphoblastoid cell lines and immune cells in 248 healthy individuals exhibiting skewed XCI. We quantify XCI escape from a linear model of genes' allelic fold-change and XIST-based degree of XCI skewing. We identify 62 genes, including 19 lncRNAs, with previously unknown patterns of escape. We find a range of tissue-specificity, with 11% of genes escaping XCI constitutively across tissues and 23% demonstrating tissue-restricted escape, including cell type-specific escape across immune cells of the same individual. We also detect substantial inter-individual variability in escape. Monozygotic twins share more similar escape than dizygotic twins, indicating that genetic factors may underlie inter-individual differences in escape. However, discordant escape also occurs within monozygotic co-twins, suggesting environmental factors also influence escape. Altogether, these data indicate that XCI escape is an under-appreciated source of transcriptional differences, and an intricate phenotype impacting variable trait expressivity in females.

Indexed as

Chromosomes, Human, XX Chromosome InactivationFemaleGenes, X-LinkedHumansPhenotypeTwins, Monozygotic

Identifiers

PMID36802379
PMCPMC9942974
OpenAlexW4321442733

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.