Evidence map›Paper›PMID 36801002›Full record

ArticleStem cell reports2023

The isochromosome 20q abnormality of pluripotent cells interrupts germ layer differentiation.

Loriana Vitillo, Fabiha Anjum, Zoe Hewitt, Dylan Stavish, Owen Laing, Duncan Baker, Ivana Barbaric, Pete Coffey

Full text read
In one paragraph

Article in Stem cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Culture-acquired genetic variation in human pluripotent stem cells: Twenty years on.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Review
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Loriana VitilloRescue, Repair and Regeneration, Institute of Ophthalmology, University College London, EC1V 9EL London, UK. Electronic address: l.vitillo@ucl.ac.uk.
Fabiha AnjumRescue, Repair and Regeneration, Institute of Ophthalmology, University College London, EC1V 9EL London, UK.
Zoe HewittCentre for Stem Cell Biology, School of Biosciences, University of Sheffield, S10 2TN Sheffield, UK.
Dylan StavishCentre for Stem Cell Biology, School of Biosciences, University of Sheffield, S10 2TN Sheffield, UK.
Owen LaingCentre for Stem Cell Biology, School of Biosciences, University of Sheffield, S10 2TN Sheffield, UK.
Duncan BakerSheffield Diagnostic Genetic Services, Sheffield Children's Hospital, Sheffield, UK.
Ivana BarbaricCentre for Stem Cell Biology, School of Biosciences, University of Sheffield, S10 2TN Sheffield, UK.
Pete CoffeyRescue, Repair and Regeneration, Institute of Ophthalmology, University College London, EC1V 9EL London, UK; Centre for Stem Cell Biology and Engineering, University of California, Santa Barbara, Santa Barbara, CA, USA; NIHR Biomedical Research Centre at Moorfields Eye Hospital NHS Foundation Trust, UCL Institute of Ophthalmology, London, UK.

Funding

Medical Research Council G1000730Medical Research Council MR/L012537/1Medical Research Council MR/R015724/1
6 · The paper itself

Abstract

Chromosome 20 abnormalities are some of the most frequent genomic changes acquired by human pluripotent stem cell (hPSC) cultures worldwide. Yet their effects on differentiation remain largely unexplored. We investigated a recurrent abnormality also found on amniocentesis, the isochromosome 20q (iso20q), during a clinical retinal pigment epithelium differentiation. Here we show that the iso20q abnormality interrupts spontaneous embryonic lineage specification. Isogenic lines revealed that under conditions that promote the spontaneous differentiation of wild-type hPSCs, the iso20q variants fail to differentiate into primitive germ layers and to downregulate pluripotency networks, resulting in apoptosis. Instead, iso20q cells are highly biased for extra-embryonic/amnion differentiation following inhibition of DNMT3B methylation or BMP2 treatment. Finally, directed differentiation protocols can overcome the iso20q block. Our findings reveal in iso20q a chromosomal abnormality that impairs the developmental competency of hPSCs toward germ layers but not amnion, which models embryonic developmental bottlenecks in the presence of aberrations.

Indexed as

IsochromosomesPluripotent Stem CellsCell DifferentiationGerm LayersHumansRetinal Pigment Epitheliumaneuploidychromosomal abnormalitieschromosome 20differentiationembryonic stem cellsgerm layersisochromosome 20qpluripotencyretinal pigment epitheliumtrophoblast

Identifiers

PMID36801002
PMCPMC10031278

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.