Evidence map›Paper›PMID 36800123›Full record

ArticleExtremophiles : life under extreme conditions2023

Bacterial diversity of an acid mine drainage beside the Xichú River (Mexico) accessed by culture-dependent and culture-independent approaches.

Elcia Margareth Souza Brito, Rémy Guyoneaud, César Augusto Caretta, Manon Joseph, Marisol Goñi-Urriza, Bernard Ollivier, Agnès Hirschler-Réa

Abstract read
PubMed Publisher
In one paragraph

Article in Extremophiles : life under extreme conditions, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Elcia Margareth Souza BritoEnvironmental Engineering Department, Laboratory of Environmental Microbiology and Applied Molecular Biology, DI-CGT, Universidad de Guanajuato, CP 36000, Guanajuato (Gto.), Mexico.ORCID http://orcid.org/0000-0003-0571-7636
Rémy GuyoneaudUMR 5254, Environmental Microbiology Group, E2S-UPPA CNRS, IPREM, Université de Pau et des Pays de l'Adour, Pau, France.ORCID http://orcid.org/0000-0001-6278-0872
César Augusto CarettaAstronomy Department, Universidad de Guanajuato, DCNE-CGT, CP 36023, Guanajuato (Gto.), Mexico. c.augusto@ugto.mx.ORCID http://orcid.org/0000-0002-7369-0431
Manon JosephUM 110, CNRS, IRD, Aix Marseille Université, Institut Méditerranéen d'Océanologie (MIO), Marseille, France.ORCID http://orcid.org/0000-0002-8140-4570
Marisol Goñi-UrrizaUMR 5254, Environmental Microbiology Group, E2S-UPPA CNRS, IPREM, Université de Pau et des Pays de l'Adour, Pau, France.ORCID http://orcid.org/0000-0001-7694-6511
Bernard OllivierUM 110, CNRS, IRD, Aix Marseille Université, Institut Méditerranéen d'Océanologie (MIO), Marseille, France.ORCID http://orcid.org/0000-0001-8506-8466
Agnès Hirschler-RéaUM 110, CNRS, IRD, Aix Marseille Université, Institut Méditerranéen d'Océanologie (MIO), Marseille, France.ORCID http://orcid.org/0000-0001-5004-0981
Centre National de la Recherche Scientifique · FRUniversidad de Guanajuato · MX

Funding

Consejo Nacional de Ciencia y Tecnología Sabbatical Grant (2650030)Consejo Nacional de Ciencia y Tecnología (Mexico) / Agence Nationale de la Recherche (France) BIOMETAL project (ANR-12-ISV7-0006-02)
6 · The paper itself

Abstract

Xichú River is a Mexican river located in an environmental preservation area called Sierra Gorda Biosphere Reserve. Around it, there are tons of abandoned mine residues that represent a serious environmental issue. Sediment samples of Xichú River, visibly contaminated by flows of an acid mine drainage, were collected to study their prokaryotic diversity. The study was based on both cultural and non-cultural approaches. The analysis of total 16S rRNA gene by MiSEQ sequencing allowed to identify 182 Operational Taxonomic Units. The community was dominated by Pseudomonadota, Bacteroidota, "Desulfobacterota" and Acidobacteriota (27, 21, 19 and 16%, respectively). Different culture conditions were used focusing on the isolation of anaerobic bacteria, including sulfate-reducing bacteria (SRB) and arsenate-reducing bacteria (ARB). Finally, 16 strains were isolated. Among them, 12 were phylogenetically identified, with two strains being SRB, belonging to the genus Solidesulfovibrio ("Desulfobacterota"), while ten are ARB belonging to the genera Azospira (Pseudomonadota), Peribacillus (Bacillota), Raineyella and Propionicimonas (Actinomycetota). The isolate representative of Raineyella genus probably corresponds to a new species, which, besides arsenate, also reduces nitrate, nitrite, and fumarate.

Indexed as

ArsenatesDesulfovibrioAcidsAngiotensin-Converting Enzyme InhibitorsAngiotensin Receptor AntagonistsBacteriaMexicoRiversRNA, Ribosomal, 16SAcidsAngiotensin-Converting Enzyme InhibitorsAngiotensin Receptor AntagonistsArsenatesRNA, Ribosomal, 16SAcid mine drainageArsenate-reducing bacteriaMetalsMiSEQRaineyellaSulfate-reducing bacteria

Identifiers

PMID36800123
OpenAlexW4321163912

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.