Evidence map›Paper›PMID 36798277›Full record

ArticlebioRxiv : the preprint server for biology2023

Insights into substrate coordination and glycosyl transfer of poplar cellulose synthase-8.

Preeti Verma, Albert L Kwansa, Ruoya Ho, Yaroslava G Yingling, Jochen Zimmer

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Preeti VermaDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, 22903, USA.
Albert L KwansaDepartment of Materials Science and Engineering, North Carolina State University, Raleigh, NC 27695, USA.
Ruoya HoDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, 22903, USA.
Yaroslava G YinglingDepartment of Materials Science and Engineering, North Carolina State University, Raleigh, NC 27695, USA.
Jochen ZimmerDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, 22903, USA.
Howard Hughes Medical Institute · USNorth Carolina State University · USUniversity of Virginia · US

Funding

Synthesis, secretion and assembly of extracellular complex carbohydrates in Gram-negative bacteriaR35GM144130 · NIGMS · UNIVERSITY OF VIRGINIA · PI Jochen Zimmer · 2022 to 2026
$2.5M
NIGMS NIH HHS R35 GM144130
6 · The paper itself

Abstract

Cellulose is an abundant cell wall component of land plants. It is synthesized from UDP-activated glucose molecules by cellulose synthase, a membrane-integrated processive glycosyltransferase. Cellulose synthase couples the elongation of the cellulose polymer with its translocation across the plasma membrane. Here, we present substrate and product-bound cryogenic electron microscopy structures of the homotrimeric cellulose synthase isoform-8 (CesA8) from hybrid aspen (poplar). UDP-glucose binds to a conserved catalytic pocket adjacent to the entrance to a transmembrane channel. The substrate's glucosyl unit is coordinated by conserved residues of the glycosyltransferase domain and amphipathic interface helices. Site-directed mutagenesis of a conserved gating loop capping the active site reveals its critical function for catalytic activity. Molecular dynamics simulations reveal prolonged interactions of the gating loop with the substrate molecule, particularly across its central conserved region. These transient interactions likely facilitate the proper positioning of the substrate molecule for glycosyl transfer and cellulose translocation. Highlights: Cryo-EM structures of substrate and product bound poplar cellulose synthase provide insights into substrate selectivitySite directed mutagenesis signifies a critical function of the gating loop for catalysisMolecular dynamics simulations support persistent gating loop - substrate interactionsGating loop helps in positioning the substrate molecule to facilitate cellulose elongationConserved cellulose synthesis substrate binding mechanism across the kingdoms.

Identifiers

PMID36798277
PMCPMC9934533
OpenAlexW4319335565

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.