Evidence map›Paper›PMID 36798257›Full record

ArticlebioRxiv : the preprint server for biology2023

Genome-wide mapping of the

Devon Fitzgerald, Anne Stringer, Carol Smith, Pascal Lapierre, Joseph T Wade

Open access · greenAbstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Devon FitzgeraldWadsworth Center, New York State Department of Health, Albany, New York, USA.
Anne StringerWadsworth Center, New York State Department of Health, Albany, New York, USA.
Carol SmithWadsworth Center, New York State Department of Health, Albany, New York, USA.
Pascal LapierreWadsworth Center, New York State Department of Health, Albany, New York, USA.
Joseph T WadeWadsworth Center, New York State Department of Health, Albany, New York, USA.
New York State Department of Health · US

Funding

Unexpected complexity in bacterial genomesR35GM144328 · NIGMS · WADSWORTH CENTER · PI Joseph Thomas Wade · 2022 to 2026
$2.6M
Pervasive transcription in bacterial genomesDP2OD007188 · OD · WADSWORTH CENTER · PI WADE, JOSEPH THOMAS · 2010 to 2010
$2.4M
Training in Biodefense and Emerging Infectious DiseaseT32AI055429 · NIAID · WADSWORTH CENTER · PI MCDONOUGH, KATHLEEN A · 2004 to 2014
$2.2M
Global mapping and analysis of a bacterial transcriptional regulatory networkR01GM114812 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI GALAGAN, JAMES E · 2015 to 2018
$2.1M
NIAID NIH HHS T32 AI055429NIGMS NIH HHS R01 GM114812NIGMS NIH HHS R35 GM144328NIH HHS DP2 OD007188
6 · The paper itself

Abstract

Genome-scale analyses have revealed many transcription factor binding sites within, rather than upstream of genes, raising questions as to the function of these binding sites. Here, we use complementary approaches to map the regulon of the IMPORTANCE: Recent studies have revealed large numbers of transcription factor binding sites within the genes of bacteria. The function, if any, of the vast majority of these binding sites has not been investigated. Here, we map the binding of the transcription factor PhoB across the

Identifiers

PMID36798257
PMCPMC9934606
OpenAlexW4319603025

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.