Evidence map›Paper›PMID 36798146›Full record

ArticleACS omega2023

Scalable Inhibitors of the Nsp3-Nsp4 Coupling in SARS-CoV-2.

Abdul-Rahman Azizogli, Varun Pai, Francesco Coppola, Roya Jafari, Joseph B Dodd-O, Rohan Harish, Bhavani Balasubramanian, Jatin Kashyap, Amanda M Acevedo-Jake, Petr Král and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in ACS omega, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Sulfoglycodendron Antivirals with Scalable Architectures and Activities.Journal of chemical information and modeling · 2024
    Article
  3. Sulfoglycodendron Antivirals with Scalable Architectures and Activities.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Abdul-Rahman AzizogliDepartment of Biological Sciences, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Varun PaiDepartment of Biological Sciences, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Francesco CoppolaDepartment of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, United States.ORCID https://orcid.org/0000-0002-2429-204X
Roya JafariDepartment of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, United States.
Joseph B Dodd-ODepartment of Biomedical Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Rohan HarishDepartment of Electrical and Computer Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Bhavani BalasubramanianDepartment of Chemistry and Environmental Sciences, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Jatin KashyapDepartment of Biomedical Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Amanda M Acevedo-JakeDepartment of Biomedical Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.
Petr KrálDepartment of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, United States.ORCID https://orcid.org/0000-0003-2992-9027
Vivek A KumarDepartment of Biological Sciences, New Jersey Institute of Technology, Newark, New Jersey 07102, United States.ORCID https://orcid.org/0000-0001-7536-9281
New Jersey Institute of Technology · USUniversity of Illinois Chicago · USRutgers, The State University of New Jersey · US

Funding

New Jersey Alliance for Clinical Translational Science: NJ ACTSUL1TR003017 · NCATS · RUTGERS BIOMEDICAL/HEALTH SCIENCES-RBHS · PI PANETTIERI, REYNOLD ALEXANDER · 2019 to 2023
$28.9M
Bioactive Scaffold for TMJ Disc Regeneration by Endogenous Stem/Progenitor CellsR01DE029321 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEE, CHANG HUN · 2020 to 2024
$3.5M
Diversity Supplement for Angiogenic and anti-microbial supports for pulp regenerationR01DE031812 · NIDCR · UNIVERSITY OF HOUSTON · PI Vivek Kumar · 2022 to 2026
$3.3M
Peptide hydrogels for management and treatment of neovascular posterior segment diseasesR15EY029504 · NEI · NEW JERSEY INSTITUTE OF TECHNOLOGY · PI KUMAR, VIVEK · 2019 to 2020
$508k
Acellular composite hydrogel scaffolds for volumetric muscle regenerationR21AR079708 · NIAMS · NEW JERSEY INSTITUTE OF TECHNOLOGY · PI GRASMAN, JONATHAN M., KUMAR, VIVEK · 2022 to 2023
$467k
NCATS NIH HHS UL1 TR003017NEI NIH HHS R15 EY029504NIAMS NIH HHS R21 AR079708NIDCR NIH HHS R01 DE029321NIDCR NIH HHS R01 DE031812
6 · The paper itself

Abstract

The human Betacoronavirus SARS-CoV-2 is a novel pathogen claiming millions of lives and causing a global pandemic that has disrupted international healthcare systems, economies, and communities. The virus is fast mutating and presenting more infectious but less lethal versions. Currently, some small-molecule therapeutics have received FDA emergency use authorization for the treatment of COVID-19, including Lagevrio (molnupiravir) and Paxlovid (nirmaltrevir/ritonavir), which target the RNA-dependent RNA polymerase and the 3CLpro main protease, respectively. Proteins downstream in the viral replication process, specifically the nonstructural proteins (Nsps1-16), are potential drug targets due to their crucial functions. Of these Nsps, Nsp4 is a particularly promising drug target due to its involvement in the SARS-CoV viral replication and double-membrane vesicle formation (mediated via interaction with Nsp3). Given the degree of sequence conservation of these two Nsps across the Betacoronavirus clade, their protein-protein interactions and functions are likely to be conserved as well in SARS-CoV-2. Through AlphaFold2 and its recent advancements, protein structures were generated of Nsp3 and 4 lumenal loops of interest. Then, using a combination of molecular docking suites and an existing library of lead-like compounds, we virtually screened 7 million ligands to identify five putative ligand inhibitors of Nsp4, which could present an alternative pharmaceutical approach against SARS-CoV-2. These ligands exhibit promising lead-like properties (ideal molecular weight and log

Identifiers

PMID36798146
PMCPMC9923439
OpenAlexW4319304326

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.