Evidence map›Paper›PMID 36798087›Full record

ArticleFrontiers in cellular and infection microbiology2023

Rabies virus uniquely reprograms the transcriptome of human monocyte-derived macrophages.

Carmen W E Embregts, Annelieke S Wentzel, Alexander T den Dekker, Wilfred F J van IJcken, Ralph Stadhouders, Corine H GeurtsvanKessel

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Carmen W E EmbregtsDepartment of Viroscience, Erasmus Medical Center, Rotterdam, Netherlands.
Annelieke S WentzelOrthopaedic Biomechanics, Department of Biomedical Engineering and Institute for Complex Molecular Systems (ICMS), Eindhoven University of Technology, Eindhoven, Netherlands.
Alexander T den DekkerCenter for Biomics, Erasmus Medical Center, Rotterdam, Netherlands.
Wilfred F J van IJckenCenter for Biomics, Erasmus Medical Center, Rotterdam, Netherlands.
Ralph StadhoudersDepartment of Pulmonary Medicine, Erasmus Medical Center, Rotterdam, Netherlands.
Corine H GeurtsvanKesselDepartment of Viroscience, Erasmus Medical Center, Rotterdam, Netherlands.
Erasmus MC · NLEindhoven University of Technology · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrophages are amongst the first immune cells that encounter rabies virus (RABV) at virus entry sites. Activation of macrophages is essential for the onset of a potent immune response, but insights into the effects of RABV on macrophage activation are scarce. In this study we performed high-throughput sequencing on RNA extracted from macrophages that were exposed to RABV for 48 hours, and compared their transcriptional profiles to that of non-polarized macrophages (M0), and macrophages polarized towards the canonical M1, M2a and M2c phenotypes. Our analysis revealed that RABV-stimulated macrophages show high expression of several M1, M2a and M2c signature genes. Apart from their partial resemblance to these phenotypes, unbiased clustering analysis revealed that RABV induces a unique and distinct polarization program. Closer examination revealed that RABV induced multiple pathways related to the interferon- and antiviral response, which were not induced under other classical polarization strategies. Surprisingly, our data show that RABV induces an activated rather than a fully suppressed macrophage phenotype, triggering virus-induced activation and polarization. This includes multiple genes with known antiviral (e.g. APOBEC3A, IFIT/OAS/TRIM genes), which may play a role in anti-RABV immunity.

Indexed as

RabiesRabies virusAntiviral AgentsCytidine DeaminaseHumansMacrophagesProteinsTranscriptomeAntiviral AgentsAPOBEC3A protein, humanCytidine DeaminaseProteinsinnate immunityLyssavirusmacrophage polarizationrabies virus (RABV)RNA sequencingtranscriptomics

Identifiers

PMID36798087
PMCPMC9927221
OpenAlexW4318592884

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.