Evidence map›Paper›PMID 36797528›Full record

ArticleCurrent microbiology2023

Immunoelectron Microscopic Analysis of Dipeptidyl-Peptidases and Dipeptide Transporter Involved in Nutrient Acquisition in Porphyromonas gingivalis.

Yu Shimoyama, Daisuke Sasaki, Yuko Ohara-Nemoto, Takayuki K Nemoto, Manami Nakasato, Minoru Sasaki, Taichi Ishikawa

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yu ShimoyamaDivision of Molecular Microbiology, Department of Microbiology, Iwate Medical University, 1-1-1 Idai-Dori, Yahaba-Cho, Shiwa-Gun, Iwate, 028-3694, Japan.ORCID http://orcid.org/0000-0002-4143-6519
Daisuke SasakiDivision of Periodontology, Department of Conservative Dentistry, Iwate Medical University School of Dentistry, 1-3-27 Chuo-Dori, Morioka, Iwate, 020-8505, Japan. daisukes@iwate-med.ac.jp.ORCID http://orcid.org/0000-0002-8260-0717
Yuko Ohara-NemotoDivision of Molecular Microbiology, Department of Microbiology, Iwate Medical University, 1-1-1 Idai-Dori, Yahaba-Cho, Shiwa-Gun, Iwate, 028-3694, Japan.ORCID http://orcid.org/0000-0002-2822-7296
Takayuki K NemotoDivision of Molecular Microbiology, Department of Microbiology, Iwate Medical University, 1-1-1 Idai-Dori, Yahaba-Cho, Shiwa-Gun, Iwate, 028-3694, Japan.ORCID http://orcid.org/0000-0002-5007-6260
Manami NakasatoDivision of Periodontology, Department of Conservative Dentistry, Iwate Medical University School of Dentistry, 1-3-27 Chuo-Dori, Morioka, Iwate, 020-8505, Japan.
Minoru SasakiDivision of Molecular Microbiology, Department of Microbiology, Iwate Medical University, 1-1-1 Idai-Dori, Yahaba-Cho, Shiwa-Gun, Iwate, 028-3694, Japan.ORCID http://orcid.org/0000-0002-6105-2424
Taichi IshikawaDivision of Molecular Microbiology, Department of Microbiology, Iwate Medical University, 1-1-1 Idai-Dori, Yahaba-Cho, Shiwa-Gun, Iwate, 028-3694, Japan.ORCID http://orcid.org/0000-0002-6229-0379
Iwate Medical University · JP

Funding

Japan Society for the Promotion of Science London JP18K09557Japan Society for the Promotion of Science London JP19K10045Japan Society for the Promotion of Science London JP19K10071Japan Society for the Promotion of Science London JP19K19005
6 · The paper itself

Abstract

Porphyromonas gingivalis is an asaccharolytic, Gram-negative, anaerobic bacterium representing a keystone pathogen in chronic periodontitis. The bacterium's energy production depends on the metabolism of amino acids, which are predominantly incorporated as dipeptides via the proton-dependent oligopeptide transporter (Pot). In this study, the localization of dipeptidyl-peptidases (DPPs) and Pot was investigated for the first time in P. gingivalis using immunoelectron microscopy with specific antibodies for the bacterial molecules and gold-conjugated secondary antibodies on ultrathin sections. High-temperature protein G and hemin-binding protein 35 were used as controls, and the cytoplasmic localization of the former and outer membrane localization of the latter were confirmed. P. gingivalis DPP4, DPP5, DPP7, and DPP11, which are considered sufficient for complete dipeptide production, were detected in the periplasmic space. In contrast, DPP3 was localized in the cytoplasmic space in accord with the absence of a signal sequence. The inner membrane localization of Pot was confirmed. Thus, spatial integration of the nutrient acquisition system exists in P. gingivalis, in which where dipeptides are produced in the periplasmic space by DPPs and readily transported across the inner membrane via Pot.

Indexed as

Dipeptidyl-Peptidases and Tripeptidyl-PeptidasesPorphyromonas gingivalisBase CompositionDipeptidesMembrane Transport ProteinsMicroscopy, ImmunoelectronNutrientsOligopeptidesPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADipeptidesDipeptidyl-Peptidases and Tripeptidyl-PeptidasesMembrane Transport ProteinsNutrientsOligopeptidesRNA, Ribosomal, 16S

Identifiers

PMID36797528
OpenAlexW4321072321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.