Evidence map›Paper›PMID 36797401›Full record

ArticleNature chemical biology2023

Site-specific encoding of photoactivity and photoreactivity into antibody fragments.

Thomas Bridge, Udo Wegmann, Jason C Crack, Kate Orman, Saher A Shaikh, William Farndon, Carlo Martins, Gerhard Saalbach, Amit Sachdeva

Open access · hybridAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Journal of the American Chemical Society · 2025
    Article
  3. Article
  4. Article
  5. A hydrophobic photouncaging reaction to profile the lipid droplet interactome in tissues.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Genetic Code Expansion inACS synthetic biology · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Thomas BridgeSchool of Chemistry, University of East Anglia, Norwich, UK.
Udo WegmannSchool of Chemistry, University of East Anglia, Norwich, UK.
Jason C CrackSchool of Chemistry, University of East Anglia, Norwich, UK.
Kate OrmanSchool of Chemistry, University of East Anglia, Norwich, UK.ORCID 0000-0002-9559-3835
Saher A ShaikhSchool of Chemistry, University of East Anglia, Norwich, UK.ORCID 0000-0002-6162-5472
William FarndonSchool of Chemistry, University of East Anglia, Norwich, UK.
Carlo MartinsProteomics Facility, The John Innes Centre, Norwich, UK.ORCID 0000-0003-1287-8884
Gerhard SaalbachProteomics Facility, The John Innes Centre, Norwich, UK.
Amit SachdevaSchool of Chemistry, University of East Anglia, Norwich, UK. a.sachdeva@uea.ac.uk.ORCID 0000-0002-3704-5750
University of East Anglia · GBJohn Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/R004692/1Wellcome Trust 204593/Z/16/Z
6 · The paper itself

Abstract

Design of biomolecules that perform two or more distinct functions in response to light remains challenging. Here, we have introduced concurrent photoactivity and photoreactivity into an epidermal growth factor receptor (EGFR)-targeting antibody fragment, 7D12. This was achieved by site-specific incorporation of photocaged tyrosine (pcY) for photoactivity and p-benzoyl-ʟ-phenylalanine (Bpa) for photoreactivity into 7D12. We identified a position for installing Bpa in 7D12 that has minimal effect on 7D12-EGFR binding affinity in the absence of light. Upon exposure to 365-nm light, this Bpa-containing 7D12 mutant forms a covalent bond with EGFR in an antigen-specific manner. We then developed a method for site-specific incorporation of pcY and Bpa at two distinct sites in 7D12. Finally, we demonstrated that in the absence of light, this pcY- and Bpa-containing mutant of 7D12 does not bind to EGFR, but irradiation with 365-nm light activates (1) specific binding and (2) covalent bond formation with EGFR.

Indexed as

ErbB ReceptorsImmunoglobulin FragmentsAntibodiesAntigensProtein BindingAntibodiesAntigensErbB ReceptorsImmunoglobulin Fragments

Identifiers

PMID36797401
PMCPMC10229432
OpenAlexW4321079298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.