Evidence map›Paper›PMID 36796842›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2023

On the Role of Theory and Modeling in Neuroscience.

Daniel Levenstein, Veronica A Alvarez, Asohan Amarasingham, Habiba Azab, Zhe S Chen, Richard C Gerkin, Andrea Hasenstaub, Ramakrishnan Iyer, Renaud B Jolivet, Sarah Marzen and 10 more

Abstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Review
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  11. Article
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  15. Review
  16. Would you publish unrealistic models?Biological cybernetics · 2024
    Article
  17. Review
  18. Article
  19. The Problem-Ladenness of Theory.Computational brain & behavior · 2024
    Article
  20. A Critical Perspective on Neural Mechanisms in Cognitive Neuroscience: Towards Unification.Perspectives on psychological science : a journal of the Association for Psychological Science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Daniel LevensteinMontreal Neurological Institute, McGill University, Montreal, Quebec H3A 2B4, Canada.
Veronica A AlvarezLaboratory on Neurobiology of Compulsive Behaviors, National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, Maryland 20892.ORCID 0000-0003-2611-8675
Asohan AmarasinghamDepartments of Mathematics and Biology, City College and the Graduate Center, City University of New York, New York, New York 10032.
Habiba AzabDepartment of Neuroscience, Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, Minnesota 55455.ORCID 0000-0002-6352-9038
Zhe S ChenDepartment of Psychiatry, Neuroscience & Physiology, New York University School of Medicine, New York, New York, 10016.ORCID 0000-0002-6483-6056
Richard C GerkinSchool of Life Sciences, Arizona State University, Tempe, Arizona 85281.
Andrea HasenstaubDepartment of Otolaryngology-Head and Neck Surgery, University of California San Francisco, San Francisco, California 94115.ORCID 0000-0003-3998-5073
Ramakrishnan IyerAllen Institute for Brain Science, Seattle, Washington 98109.
Renaud B JolivetMaastricht Centre for Systems Biology, Maastricht University, Maastricht, The Netherlands.
Sarah MarzenW. M. Keck Science Department, Pitzer, Scripps, and Claremont McKenna Colleges, Claremont, California 91711.
Joseph D MonacoDepartment of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21218.ORCID 0000-0003-0792-8322
Astrid A PrinzDepartment of Biology, Emory University, Atlanta, Georgia 30322.ORCID 0000-0001-5600-1924
Salma QuraishiNeuroscience, Developmental and Regnerative Biology Department, University of Texas at San Antonio, San Antonio, Texas 78249.
Fidel SantamariaNeuroscience, Developmental and Regnerative Biology Department, University of Texas at San Antonio, San Antonio, Texas 78249.
Sabyasachi ShivkumarBrain and Cognitive Sciences, University of Rochester, Rochester, New York 14627.ORCID 0000-0002-4086-7288
Matthew F SinghDepartment of Psychological & Brain Sciences, Department of Electrical & Systems Engineering, Washington University in St. Louis, St. Louis, Missouri 63112.
Roger TraubIBM T.J. Watson Research Center, AI Foundations, Yorktown Heights, New York 10598.ORCID 0000-0002-4879-5936
Farzan NadimMontreal Neurological Institute, McGill University, Montreal, Quebec H3A 2B4, Canada.ORCID 0000-0003-4144-9042
Horacio G RotsteinMontreal Neurological Institute, McGill University, Montreal, Quebec H3A 2B4, Canada.ORCID 0000-0002-4387-5160
A David RedishDepartment of Neuroscience, University of Minnesota, Minneapolis, Minnesota 55455 redish@umn.edu.ORCID 0000-0003-3644-9072

Funding

Using a computational and network neuroscience framework to study pharmacological manipulations of state representation processes in early psychosisP50MH119569 · NIMH · UNIVERSITY OF MINNESOTA · PI A DAVID REDISH, Sophia Vinogradov · 2020 to 2026
$24.5M
Synaptic mechanisms underlying reward seeking and compulsive drug useZIAAA000421 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI ALVAREZ, VERONICA A · 2009 to 2025
$23.1M
The Structure of Olfactory Neural and Perceptual SpacesU19NS112953 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GERKIN, RICHARD C · 2019 to 2023
$18.4M
REGULATION OF NEURONAL OSCILLATIONS BY SYNAPTIC DYNAMICSR01MH060605 · NIMH · NEW JERSEY INSTITUTE OF TECHNOLOGY · PI Dirk Martin Bucher, Farzan Nadim · 2001 to 2026
$6.6M
Section on Neurobiology of Compulsive BehaviorsZIAMH002987 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI ALVAREZ, VERONICA · 2023 to 2025
$5.2M
Testing hybrid theories of action-selectionR01MH112688 · NIMH · UNIVERSITY OF MINNESOTA · PI A DAVID REDISH · 2017 to 2026
$5.0M
Relating episodic memory and episodic future thinking in hippocampusR01MH080318 · NIMH · UNIVERSITY OF MINNESOTA · PI REDISH, A DAVID · 2008 to 2020
$3.7M
Dynamic regulation of auditory context processing by cortical inhibitionR01DC014101 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HASENSTAUB, ANDREA RAYNE · 2014 to 2018
$1.9M
CRNS: An Integrative Study of Hippocampal-Neocortical Memory Coding during Sleep R01MH118928 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHEN, ZHE SAGE, WILSON, MATTHEW A · 2018 to 2022
$1.8M
Tools for Model Discovery, Validation and Selection in Neuroscience with NeuroMLR01MH106674 · NIMH · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CROOK, SHARON MARIE · 2015 to 2018
$1.6M
A unified framework to study history dependence in the nervous systemR01EB026939 · NIBIB · UNIVERSITY OF TEXAS SAN ANTONIO · PI SANTAMARIA, FIDEL · 2019 to 2019
$1.0M
Relating episodic memory and episodic future thinking in hippocampusR56MH080318 · NIMH · UNIVERSITY OF MINNESOTA · PI REDISH, A DAVID · 2014 to 2015
$747k
Intramural NIH HHS ZIA AA000421NIBIB NIH HHS R01 EB021711NIBIB NIH HHS R01 EB026939NIDA NIH HHS T90 DA043219NIDCD NIH HHS R01 DC014101NIDCD NIH HHS R01 DC018455NIMH NIH HHS P50 MH119569NIMH NIH HHS R01 MH060605NIMH NIH HHS R01 MH080318NIMH NIH HHS R01 MH106674NIMH NIH HHS R01 MH112688NIMH NIH HHS R01 MH118928NIMH NIH HHS R56 MH080318NINDS NIH HHS R03 NS109923NINDS NIH HHS U19 NS112953
6 · The paper itself

Abstract

In recent years, the field of neuroscience has gone through rapid experimental advances and a significant increase in the use of quantitative and computational methods. This growth has created a need for clearer analyses of the theory and modeling approaches used in the field. This issue is particularly complex in neuroscience because the field studies phenomena that cross a wide range of scales and often require consideration at varying degrees of abstraction, from precise biophysical interactions to the computations they implement. We argue that a pragmatic perspective of science, in which descriptive, mechanistic, and normative models and theories each play a distinct role in defining and bridging levels of abstraction, will facilitate neuroscientific practice. This analysis leads to methodological suggestions, including selecting a level of abstraction that is appropriate for a given problem, identifying transfer functions to connect models and data, and the use of models themselves as a form of experiment.

Indexed as

NeurosciencesBiophysics

Identifiers

PMID36796842
PMCPMC9962842

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.