Evidence map›Paper›PMID 36795673›Full record

ArticlePloS one2023

Comparative transcriptome analyses reveal insights into catkin bloom patterns in pecan protogynous and protandrous cultivars.

Hormat Shadgou Rhein, Avinash Sreedasyam, Peter Cooke, Ciro Velasco-Cruz, Jane Grimwood, Jeremy Schmutz, Jerry Jenkins, Sajal Kumar, Mingzhou Song, Richard J Heerema and 2 more

Abstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Hormat Shadgou RheinMolecular Biology Program, New Mexico State University, Las Cruces, New Mexico, United States of America.ORCID 0000-0001-9878-6213
Avinash SreedasyamHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America.
Peter CookeMicroscopy Core Facility, New Mexico State University, Las Cruces, New Mexico, United States of America.
Ciro Velasco-CruzDepartment of Entomology, Plant Pathology, and Weed Science, New Mexico State University, Las Cruces, New Mexico, United States of America.
Jane GrimwoodHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America.
Jeremy SchmutzHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America.
Jerry JenkinsHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America.
Sajal KumarDepartment of Computer Science, New Mexico State University, Las Cruces, New Mexico, United States of America.
Mingzhou SongDepartment of Computer Science, New Mexico State University, Las Cruces, New Mexico, United States of America.
Richard J HeeremaDepartments of Plant and Environmental Sciences and Extension Plant Sciences, Las Cruces, New Mexico, United States of America.
L J GraukeUSDA ARS Pecan Breeding and Genetics, Somerville, Texas, United States of America.ORCID 0000-0003-0064-719X
Jennifer J RandallMolecular Biology Program, New Mexico State University, Las Cruces, New Mexico, United States of America.ORCID 0000-0002-1901-5814

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In perennial plants such as pecan, once reproductive maturity is attained, there are genetic switches that are regulated and required for flower development year after year. Pecan trees are heterodichogamous with both pistillate and staminate flowers produced on the same tree. Therefore, defining genes exclusively responsible for pistillate inflorescence and staminate inflorescence (catkin) initiation is challenging at best. To understand these genetic switches and their timing, this study analyzed catkin bloom and gene expression of lateral buds collected from a protogynous (Wichita) and a protandrous (Western) pecan cultivar in summer, autumn and spring. Our data showed that pistillate flowers in the current season on the same shoot negatively impacted catkin production on the protogynous 'Wichita' cultivar. Whereas fruit production the previous year on 'Wichita' had a positive effect on catkin production on the same shoot the following year. However, fruiting the previous year nor current year pistillate flower production had no significant effect on catkin production on 'Western' (protandrous cultivar) cultivar. The RNA-Seq results present more significant differences between the fruiting and non-fruiting shoots of the 'Wichita' cultivar compared to the 'Western' cultivar, revealing the genetic signals likely responsible for catkin production. Our data presented here, indicates the genes showing expression for the initiation of both types of flowers the season before bloom.

Indexed as

CaryaFlowersFruitGene Expression ProfilingPlant Cone

Identifiers

PMID36795673
PMCPMC9934368

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.