Evidence map›Paper›PMID 36794931›Full record

ArticlemSphere2023

Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates.

Jeanne Laurentie, Valentin Loux, Christelle Hennequet-Antier, Emilie Chambellon, Julien Deschamps, Angélina Trotereau, Sylviane Furlan, Claire Darrigo, Florent Kempf, Julie Lao and 14 more

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Differentiating commensal and disease-associatedFrontiers in veterinary science · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. A rare case of invasiveClinical case reports · 2024
    Article
  12. The Genetic Landscape of Antimicrobial Resistance Genes inAntibiotics (Basel, Switzerland) · 2024
    Article
  13. Molecular Genomic Analyses ofMicroorganisms · 2024
    Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 1 country.

Jeanne LaurentieUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France.
Valentin LouxUniversité Paris-Saclay, INRAE, BioinfOmics, MIGALE Bioinformatics Facility, Jouy-en-Josas, France.
Christelle Hennequet-AntierUniversité Paris-Saclay, INRAE, BioinfOmics, MIGALE Bioinformatics Facility, Jouy-en-Josas, France.
Emilie ChambellonINRAE, Université de Tours, ISP, Nouzilly, France.
Julien DeschampsUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France.
Angélina TrotereauINRAE, Université de Tours, ISP, Nouzilly, France.
Sylviane FurlanUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France.
Claire DarrigoINRAE, Université de Tours, ISP, Nouzilly, France.
Florent KempfINRAE, Université de Tours, ISP, Nouzilly, France.
Julie LaoUniversité Paris-Saclay, INRAE, BioinfOmics, MIGALE Bioinformatics Facility, Jouy-en-Josas, France.
Marine MilhesINRAE, Genotoul, GeT-PlaGe, Castanet-Tolosan, France.
Céline RoquesINRAE, Genotoul, GeT-PlaGe, Castanet-Tolosan, France.
Benoit QuinquisUniversité Paris-Saclay, INRAE, MGP, Jouy-en-Josas, France.
Céline VandecasteeleINRAE, Genotoul, GeT-PlaGe, Castanet-Tolosan, France.
Roxane BoyerINRAE, Genotoul, GeT-PlaGe, Castanet-Tolosan, France.
Olivier BouchezINRAE, Genotoul, GeT-PlaGe, Castanet-Tolosan, France.
Francis RepoilaUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France.
Jean Le GuennecLabofarm, Loudéac, France.
Hélène ChiapelloUniversité Paris-Saclay, INRAE, BioinfOmics, MIGALE Bioinformatics Facility, Jouy-en-Josas, France.
Romain BriandetUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France.ORCID 0000-0002-8123-3492
Emmanuelle HelloinINRAE, Université de Tours, ISP, Nouzilly, France.
Catherine SchoulerINRAE, Université de Tours, ISP, Nouzilly, France.
Isabelle KempfANSES Laboratoire de Ploufragan-Plouzané-Niort, Ploufragan, France.ORCID 0000-0002-8912-3044
Pascale SerrorUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France.ORCID 0000-0002-8446-9011
Université de Tours · FRAgroParisTech · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversité Paris-Saclay · FRAgence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterococcus cecorum is an emerging pathogen responsible for osteomyelitis, spondylitis, and femoral head necrosis causing animal suffering and mortality and requiring antimicrobial use in poultry. Paradoxically, E. cecorum is a common inhabitant of the intestinal microbiota of adult chickens. Despite evidence suggesting the existence of clones with pathogenic potential, the genetic and phenotypic relatedness of disease-associated isolates remains little investigated. Here, we sequenced and analyzed the genomes and characterized the phenotypes of more than 100 isolates, the majority of which were collected over the last 10 years from 16 French broiler farms. Comparative genomics, genome-wide association studies, and the measured susceptibility to serum, biofilm-forming capacity, and adhesion to chicken type II collagen were used to identify features associated with clinical isolates. We found that none of the tested phenotypes could discriminate the origin of the isolates or the phylogenetic group. Instead, we found that most clinical isolates are grouped phylogenetically, and our analyses selected six genes that discriminate 94% of isolates associated with disease from those that are not. Analysis of the resistome and the mobilome revealed that multidrug-resistant clones of

Indexed as

Anti-Infective AgentsPoultry DiseasesAnimalsChickensEnterococcusGenome-Wide Association StudyPhylogenyPoultryAnti-Infective Agentsantimicrobial resistanceavian pathogenesiscomparative genomicsEnterococcus cecorumpoultryveterinary pathogens

Identifiers

PMID36794931
PMCPMC10117131
OpenAlexW4321002330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.