Evidence map›Paper›PMID 36794631›Full record

ReviewAmerican journal of biological anthropology2023

Genomic structural variation: A complex but important driver of human evolution.

Daniela C Soto, José M Uribe-Salazar, Colin J Shew, Aarthi Sekar, Sean P McGinty, Megan Y Dennis

Open access · hybridAbstract readReview
In one paragraph

Review in American journal of biological anthropology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Human-specific gene expansions contribute to brain evolution.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Review
  10. Zebrafish models of human-duplicatedbioRxiv : the preprint server for biology · 2024
    Article
  11. Review
  12. Article
  13. Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.International journal of molecular sciences · 2023
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Daniela C SotoGenome Center, MIND Institute, Department of Biochemstry & Molecular Medicine, University of California, Davis, California, USA.ORCID 0000-0002-6292-655X
José M Uribe-SalazarGenome Center, MIND Institute, Department of Biochemstry & Molecular Medicine, University of California, Davis, California, USA.ORCID 0000-0003-4875-818X
Colin J ShewGenome Center, MIND Institute, Department of Biochemstry & Molecular Medicine, University of California, Davis, California, USA.ORCID 0000-0001-6660-8818
Aarthi SekarGenome Center, MIND Institute, Department of Biochemstry & Molecular Medicine, University of California, Davis, California, USA.
Sean P McGintyGenome Center, MIND Institute, Department of Biochemstry & Molecular Medicine, University of California, Davis, California, USA.ORCID 0000-0001-7443-8441
Megan Y DennisGenome Center, MIND Institute, Department of Biochemstry & Molecular Medicine, University of California, Davis, California, USA.ORCID 0000-0002-8502-5420
University of California, Davis · US

Funding

The function of duplicated genes in human brain evolution and diseaseDP2MH119424 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI DENNIS, MEGAN Y · 2018 to 2018
$2.4M
Genetic and functional assessment of human-specific duplicated genesF31HG011205 · NHGRI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHEW, COLIN JAMES · 2021 to 2022
$77k
NHGRI NIH HHS F31 HG011205NIMH NIH HHS DP2 MH119424
6 · The paper itself

Abstract

Structural variants (SVs)-including duplications, deletions, and inversions of DNA-can have significant genomic and functional impacts but are technically difficult to identify and assay compared with single-nucleotide variants. With the aid of new genomic technologies, it has become clear that SVs account for significant differences across and within species. This phenomenon is particularly well-documented for humans and other primates due to the wealth of sequence data available. In great apes, SVs affect a larger number of nucleotides than single-nucleotide variants, with many identified SVs exhibiting population and species specificity. In this review, we highlight the importance of SVs in human evolution by (1) how they have shaped great ape genomes resulting in sensitized regions associated with traits and diseases, (2) their impact on gene functions and regulation, which subsequently has played a role in natural selection, and (3) the role of gene duplications in human brain evolution. We further discuss how to incorporate SVs in research, including the strengths and limitations of various genomic approaches. Finally, we propose future considerations in integrating existing data and biospecimens with the ever-expanding SV compendium propelled by biotechnology advancements.

Indexed as

Genomic Structural VariationHominidaeAnimalsGenomeGenomicsHumansNucleotidesPrimatesNucleotidesbraingene duplicationsgenomeshuman evolutionstructural variation

Identifiers

PMID36794631
PMCPMC10329998
OpenAlexW4321003756

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.