Evidence map›Paper›PMID 36793886›Full record

ArticlePHAGE (New Rochelle, N.Y.)2022

Genomic Profiling of Non-O157 Shiga Toxigenic

Emmanuel W Bumunang, Tim A McAllister, Rodrigo Ortega Polo, Collins N Ateba, Kim Stanford, Jared Schlechte, Matthew Walker, Kellie MacLean, Yan D Niu

Open access · diamondAbstract read
In one paragraph

Article in PHAGE (New Rochelle, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. NovelPHAGE (New Rochelle, N.Y.) · 2023
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Emmanuel W BumunangDepartment of Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, Canada.
Tim A McAllisterAgriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, Canada.
Rodrigo Ortega PoloAgriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, Canada.
Collins N AtebaDepartment of Microbiology, Faculty of Natural and Agricultural Sciences, North-West University, Mmabatho, South Africa.
Kim StanfordDepartment of Biological Sciences, University of Lethbridge, Lethbridge, Canada.
Jared SchlechteDepartment of Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, Canada.ORCID https://orcid.org/0000-0003-1375-2570
Matthew WalkerCanadian Science Centre for Human and Animal Health, Public Health Agency of Canada, Winnipeg, Canada.
Kellie MacLeanCumming School of Medicine, Faculty of Science, University of Calgary, Calgary, Canada.
Yan D NiuDepartment of Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, Canada.ORCID https://orcid.org/0000-0002-4483-5734
University of Calgary · CAAgriculture and Agri-Food Canada · CANorth-West University · ZAPublic Health Agency of Canada · CAUniversity of Lethbridge · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Non-O157 Shiga toxigenic Materials and Methods: In this study, 10 non-O157-infecting phages previously isolated from feedlot cattle and dairy farms in the North-West province of South Africa were sequenced, and their genomes were analyzed. Results: Comparative genomics and proteomics revealed that the phages were closely related to other Conclusions: Comparative genomic analysis identified a diversity of unique non-O157-infecting phages, which could be used to mitigate the abundance of various non-O157 STEC serogroups without safety concerns.

Indexed as

bacteriophagescomparative genomicsShiga toxigenic Escherichia coliwhole genome sequencing

Identifiers

PMID36793886
PMCPMC9917312
OpenAlexW4296777855

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.