Evidence map›Paper›PMID 36793137›Full record

ArticlePlant methods2023

Automated quantification of fluorescence and morphological changes in pretreated wood cells by fluorescence macroscopy.

Edwige Audibert, Berangère Lebas, Corentin Spriet, Anouck Habrant, Brigitte Chabbert, Gabriel Paës

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Edwige Audibert *Université de Reims Champagne-Ardenne, INRAE, FARE, UMR A 614, Reims, France.
Berangère Lebas *Université de Reims Champagne-Ardenne, INRAE, FARE, UMR A 614, Reims, France.
Corentin SprietUniv. Lille, CNRS, UMR 8576 - UGSF - Unité de Glycobiologie Structurale Et Fonctionnelle, Lille, France.
Anouck HabrantUniversité de Reims Champagne-Ardenne, INRAE, FARE, UMR A 614, Reims, France.
Brigitte ChabbertUniversité de Reims Champagne-Ardenne, INRAE, FARE, UMR A 614, Reims, France. brigitte.chabbert@inrae.fr.
Gabriel PaësUniversité de Reims Champagne-Ardenne, INRAE, FARE, UMR A 614, Reims, France. gabriel.paes@inrae.fr.ORCID http://orcid.org/0000-0003-0239-9716
Fractionnation of AgroResources and Environment · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLignocellulosic biomass is a complex network of polysaccharides and lignin that requires a pretreatment step to overcome recalcitrance and optimize valorisation into biobased products. Pretreatment of biomass induces chemical and morphological changes. Quantification of these changes is critical to understand biomass recalcitrance and to predict lignocellulose reactivity. In this study, we propose an automated method for the quantification of chemical and morphological parameters through fluorescence macroscopy, which was applied on wood samples (spruce, beechwood) pretreated with steam explosion.

resultsResults in fluorescence macroscopy highlighted the impact of steam explosion on spruce and beechwood: fluorescence intensity of samples was highly altered, especially for the most severe conditions. Morphological changes were also revealed: shrinkage of cells and deformation of cell walls manifested as the loss of rectangularity or circular shape, for tracheids in spruce and vessels in beechwood respectively. Quantification of fluorescence intensity of cell walls and quantification of morphological parameters related to cell lumens were carried out accurately by applying the automated method onto the macroscopic images. The results showed that lumens area and circularity could be considered as complementary markers of cell deformation, and that fluorescence intensity of the cell walls could be related to morphological changes and to the conditions of pretreatment.

conclusionsThe developed procedure allows simultaneous and effective quantification of morphological parameters and fluorescence intensity of the cell walls. This approach can be applied to fluorescence macroscopy as well as other imaging techniques and provides encouraging results towards the understanding of biomass architecture.

Indexed as

AutomationCellFluorescenceMacroscopyMorphologyPlantQuantification

Identifiers

PMID36793137
PMCPMC9933311
OpenAlexW4321004274

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.