Evidence map›Paper›PMID 36792596›Full record

ArticleNature communications2023

Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex.

Kazutoshi Tani, Ryo Kanno, Xuan-Cheng Ji, Itsusei Satoh, Yuki Kobayashi, Malgorzata Hall, Long-Jiang Yu, Yukihiro Kimura, Akira Mizoguchi, Bruno M Humbel and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Kazutoshi Tani *Graduate School of Medicine, Mie University, Tsu, Japan. ktani@doc.medic.mie-u.ac.jp.ORCID 0000-0003-4835-154X
Ryo Kanno *Scientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan.
Xuan-Cheng JiFaculty of Science, Ibaraki University, Mito, Japan.
Itsusei SatohFaculty of Science, Ibaraki University, Mito, Japan.
Yuki KobayashiFaculty of Science, Ibaraki University, Mito, Japan.
Malgorzata HallScientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan.
Long-Jiang YuPhotosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-4962-1049
Yukihiro KimuraDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, Japan.ORCID 0000-0003-3747-0367
Akira MizoguchiGraduate School of Medicine, Mie University, Tsu, Japan.
Bruno M HumbelScientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan.
Michael T MadiganSchool of Biological Sciences, Department of Microbiology, Southern Illinois University, Carbondale, IL, USA.
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, Japan. wang@ml.ibaraki.ac.jp.ORCID 0000-0003-1676-2002
Ibaraki University · JPOkinawa Institute of Science and Technology Graduate University · JPMie University · JPChinese Academy of Sciences · CNKobe University · JPSouthern Illinois University Carbondale · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhodobacter (Rba.) capsulatus has been a favored model for studies of all aspects of bacterial photosynthesis. This purple phototroph contains PufX, a polypeptide crucial for dimerization of the light-harvesting 1-reaction center (LH1-RC) complex, but lacks protein-U, a U-shaped polypeptide in the LH1-RC of its close relative Rba. sphaeroides. Here we present a cryo-EM structure of the Rba. capsulatus LH1-RC purified by DEAE chromatography. The crescent-shaped LH1-RC exhibits a compact structure containing only 10 LH1 αβ-subunits. Four αβ-subunits corresponding to those adjacent to protein-U in Rba. sphaeroides were absent. PufX in Rba. capsulatus exhibits a unique conformation in its N-terminus that self-associates with amino acids in its own transmembrane domain and interacts with nearby polypeptides, preventing it from interacting with proteins in other complexes and forming dimeric structures. These features are discussed in relation to the minimal requirements for the formation of LH1-RC monomers and dimers, the spectroscopic behavior of both the LH1 and RC, and the bioenergetics of energy transfer from LH1 to the RC.

Indexed as

Rhodobacter capsulatusRhodobacter sphaeroidesBacterial ProteinsLight-Harvesting Protein ComplexesModels, MolecularPeptidesPhotosynthesisBacterial ProteinsLight-Harvesting Protein ComplexesPeptides

Identifiers

PMID36792596
PMCPMC9932092
OpenAlexW4321003418

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.