ArticlePloS one2023
Features extracted using tensor decomposition reflect the biological features of the temporal patterns of human blood multimodal metabolome.
Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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4 citing papers in PubMed.
- Longitudinal Metabolomics Data Analysis Informed by Mechanistic Models.Metabolites · 2024Article
- Revealing static and dynamic biomarkers from postprandial metabolomics data through coupled matrix and tensor factorizations.Metabolomics : Official journal of the Metabolomic Society · 2024Article
- Model selection reveals selective regulation of blood amino acid and lipid metabolism by insulin in humans.iScience · 2024Article
- Characterizing human postprandial metabolic response using multiway data analysis.Metabolomics : Official journal of the Metabolomic Society · 2024Article
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5 authors.
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Abstract
High-throughput omics technologies have enabled the profiling of entire biological systems. For the biological interpretation of such omics data, two analyses, hypothesis- and data-driven analyses including tensor decomposition, have been used. Both analyses have their own advantages and disadvantages and are mutually complementary; however, a direct comparison of these two analyses for omics data is poorly examined.We applied tensor decomposition (TD) to a dataset representing changes in the concentrations of 562 blood molecules at 14 time points in 20 healthy human subjects after ingestion of 75 g oral glucose. We characterized each molecule by individual dependence (constant or variable) and time dependence (later peak or early peak). Three of the four features extracted by TD were characterized by our previous hypothesis-driven study, indicating that TD can extract some of the same features obtained by hypothesis-driven analysis in a non-biased manner. In contrast to the years taken for our previous hypothesis-driven analysis, the data-driven analysis in this study took days, indicating that TD can extract biological features in a non-biased manner without the time-consuming process of hypothesis generation.
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