Evidence map›Paper›PMID 36791110›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Gatekeeper mutations activate FGF receptor tyrosine kinases by destabilizing the autoinhibited state.

Alida Besch, William M Marsiglia, Moosa Mohammadi, Yingkai Zhang, Nathaniel J Traaseth

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alida BeschDepartment of Chemistry, New York University, New York, NY 10003.
William M MarsigliaDepartment of Chemistry, New York University, New York, NY 10003.
Moosa MohammadiDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, NY 10016.ORCID 0000-0003-2434-9437
Yingkai ZhangDepartment of Chemistry, New York University, New York, NY 10003.ORCID 0000-0002-4984-3354
Nathaniel J TraasethDepartment of Chemistry, New York University, New York, NY 10003.ORCID 0000-0002-1185-6088

Funding

Mechanisms of Allostery and Molecular Recognition in the Small Multidrug Resistance FamilyR01AI108889 · NIAID · NEW YORK UNIVERSITY · PI Nathaniel J. Traaseth · 2014 to 2026
$5.4M
Computational modulator design and machine learning to target protein-protein interactionsR35GM127040 · NIGMS · NEW YORK UNIVERSITY · PI Yingkai Zhang · 2018 to 2026
$4.6M
FGF Receptor Structure, Dynamics and FunctionR01GM117118 · NIGMS · NEW YORK UNIVERSITY · PI TRAASETH, NATHANIEL J. · 2017 to 2020
$1.3M
Acquisition of a Cryoprobe for a 600 MHz NMR SpectrometerS10OD016343 · OD · NEW YORK UNIVERSITY · PI KROGSGAARD, MICHELLE, TRAASETH, NATHANIEL J. · 2014 to 2014
$360k
NIAID NIH HHS R01 AI108889NIGMS NIH HHS R01 GM117118NIGMS NIH HHS R35 GM127040NIH HHS S10 OD016343
6 · The paper itself

Abstract

Many types of human cancers are being treated with small molecule ATP-competitive inhibitors targeting the kinase domain of receptor tyrosine kinases. Despite initial successful remission, long-term treatment almost inevitably leads to the emergence of drug resistance mutations at the gatekeeper residue hindering the access of the inhibitor to a hydrophobic pocket at the back of the ATP-binding cleft. In addition to reducing drug efficacy, gatekeeper mutations elevate the intrinsic activity of the tyrosine kinase domain leading to more aggressive types of cancer. However, the mechanism of gain-of-function by gatekeeper mutations is poorly understood. Here, we characterized fibroblast growth factor receptor (FGFR) tyrosine kinases harboring two distinct gatekeeper mutations using kinase activity assays, NMR spectroscopy, bioinformatic analyses, and MD simulations. Our data show that gatekeeper mutations destabilize the autoinhibitory conformation of the DFG motif locally and of the kinase globally, suggesting they impart gain-of-function by facilitating the kinase's ability to populate the active state.

Indexed as

NeoplasmsReceptor Protein-Tyrosine KinasesAdenosine TriphosphateHumansMutationProtein Kinase InhibitorsReceptors, Fibroblast Growth FactorTyrosineAdenosine TriphosphateProtein Kinase InhibitorsReceptor Protein-Tyrosine KinasesReceptors, Fibroblast Growth FactorTyrosinemolecular dynamicsNMR spectroscopyreceptor tyrosine kinases

Identifiers

PMID36791110
PMCPMC9974468

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.