Evidence map›Paper›PMID 36790538›Full record

ArticlePlant molecular biology2023

Specific alterations in riboproteomes composition of isonicotinic acid treated arabidopsis seedlings.

Zainab Fakih, Mélodie B Plourde, Charlène Eugénie Tomi Nkouankou, Victor Fourcassié, Sylvie Bourassa, Arnaud Droit, Hugo Germain

Abstract read
In one paragraph

Article in Plant molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zainab FakihDepartment of Chemistry, Biochemistry and Physics and Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, G9A 5H9, Trois-Rivières, Québec, Canada.
Mélodie B PlourdeDepartment of Chemistry, Biochemistry and Physics and Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, G9A 5H9, Trois-Rivières, Québec, Canada.
Charlène Eugénie Tomi NkouankouDepartment of Chemistry, Biochemistry and Physics and Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, G9A 5H9, Trois-Rivières, Québec, Canada.
Victor FourcassiéProteomics Platform, Centre de recherche du CHU de Québec, Faculty of Medicine, Université Laval, G1V 4G2, Québec City, Québec, Canada.
Sylvie BourassaProteomics Platform, Centre de recherche du CHU de Québec, Faculty of Medicine, Université Laval, G1V 4G2, Québec City, Québec, Canada.
Arnaud DroitProteomics Platform, Centre de recherche du CHU de Québec, Faculty of Medicine, Université Laval, G1V 4G2, Québec City, Québec, Canada.
Hugo GermainDepartment of Chemistry, Biochemistry and Physics and Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, G9A 5H9, Trois-Rivières, Québec, Canada. Hugo.Germain@uqtr.ca.ORCID http://orcid.org/0000-0002-7046-6194

Funding

Canada Research Chairs CRC-2017-103Natural Sciences and Engineering Research Council of Canada RGPIN/4002-2020
6 · The paper itself

Abstract

Plants have developed strategies to deal with the great variety of challenges they are exposed to. Among them, common targets are the regulation of transcription and translation to finely modulate protein levels during both biotic and abiotic stresses. Increasing evidence suggests that ribosomes are highly adaptable modular supramolecular structures which remodel to adapt to stresses. Each Arabidopsis thaliana ribosome consists of approximately 81 distinct ribosomal proteins (RPs), each of which is encoded by two to seven genes. To investigate the identity of ribosomal proteins of the small subunit (RPS) and of the large subunit (RPL) as well as ribosomes-associated proteins, we analysed by LC/MS/MS immunopurified ribosomes from A. thaliana leaves treated with isonicotinic acid (INA), an inducer of plant innate immunity. We quantified a total of 2084 proteins. 165 ribosome-associated proteins showed increased abundance while 52 were less abundant. Of the 52 identified RPS (from a possibility of 104 encoding genes), 15 were deregulated. Similarly, from the 148 possible RPL, 80 were detected and 9 were deregulated. Our results revealed potential candidates involved in innate immunity that could be interesting targets for functional genomic studies.

Indexed as

ArabidopsisIsonicotinic AcidsRibosomal ProteinsSeedlingsTandem Mass SpectrometryIsonicotinic AcidsRibosomal ProteinsArabidopsis thalianaPlant immunityProteomicsRibosomal protein large subunit (RPL)Ribosomal protein small subunit (RPS)Translation regulation

Identifiers

PMID36790538
PMCPMC10090002

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.