Evidence map›Paper›PMID 36789166›Full record

ArticleBio-protocol2023

Lysate-to-grid: Rapid Isolation of Native Complexes from Budding Yeast for Cryo-EM Imaging.

Ian Cooney, Deirdre C Mack, Aaron J Ferrell, Michael G Stewart, Shuxin Wang, Helen M Donelick, Daniela Tamayo-Jaramillo, Dakota L Greer, Danyang Zhu, Wenyan Li and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Bio-protocol, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Cryo-EM single-particle analysis expanding towards increasingly native samples.Acta crystallographica. Section D, Structural biology · 2025
    Review
  2. Article
  3. Review
  4. Article
  5. Visualization of the Cdc48 AAA+ ATPase protein unfolding pathway.bioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Ian CooneyDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Deirdre C MackDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Aaron J FerrellDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Michael G StewartDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Shuxin WangDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Helen M DonelickDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Daniela Tamayo-JaramilloDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Dakota L GreerDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Danyang ZhuDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Wenyan LiDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
Peter S ShenDepartment of Biochemistry, School of Medicine, University of Utah, Salt Lake City, Utah, USA 84112.
University of Utah · US

Funding

Visualizing the Mechanisms of Protein Quality ControlR35GM133772 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Peter Shen · 2019 to 2026
$3.4M
Interactive, Self-Paced Traning Modules for the Cryo-EM NoviceR25EY029124 · NEI · UNIVERSITY OF UTAH · PI BRASCH, JULIA, IWASA, JANET · 2018 to 2023
$774k
NEI NIH HHS R25 EY029124NIGMS NIH HHS R35 GM133772
6 · The paper itself

Abstract

Single-particle electron cryo-microscopy (cryo-EM) is an effective tool to determine high-resolution structures of macromolecular complexes. Its lower requirements for sample concentration and purity make it an accessible method to determine structures of low-abundant protein complexes, such as those isolated from native sources. While there are many approaches to protein purification for cryo-EM, attaining suitable particle quality and abundance is generally the major bottleneck to the typical single-particle project workflow. Here, we present a protocol using budding yeast (

Indexed as

Co-immunoprecipitationCryo-EMProtein complexesProtein purificationVitrificationYeast transformation

Identifiers

PMID36789166
PMCPMC9901474
OpenAlexW4317425147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.