Evidence map›Paper›PMID 36789151›Full record

ArticleCommunications chemistry2018

Shape selective bifacial recognition of double helical DNA.

Shivaji A Thadke, V M Hridya, J Dinithi R Perera, Roberto R Gil, Arnab Mukherjee, Danith H Ly

Abstract read
In one paragraph

Article in Communications chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A pothole-filling strategy for selective targeting of rCUG-repeats associated with myotonic dystrophy type 1.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Fluorobenzene Nucleobase Analogues for Triplex-Forming Peptide Nucleic Acids.Chembiochem : a European journal of chemical biology · 2022
    Article
  15. Article
  16. Janus-Faced Molecules against Plant Pathogenic Fungi.International journal of molecular sciences · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shivaji A ThadkeDepartment of Chemistry and Institute for Biomolecular Design and Discovery (IBD), Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.ORCID 0000-0001-7339-9575
V M HridyaDepartment of Chemistry, Indian Institute of Science Education and Research (IISER), Pune, Maharashtra 411008, India.
J Dinithi R PereraDepartment of Chemistry and Institute for Biomolecular Design and Discovery (IBD), Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.
Roberto R GilDepartment of Chemistry and Institute for Biomolecular Design and Discovery (IBD), Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.ORCID 0000-0002-8810-5047
Arnab MukherjeeDepartment of Chemistry, Indian Institute of Science Education and Research (IISER), Pune, Maharashtra 411008, India.ORCID 0000-0001-5691-6120
Danith H LyDepartment of Chemistry and Institute for Biomolecular Design and Discovery (IBD), Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.ORCID 0000-0002-8760-0070

Funding

A Rational Approach to Targeting Unstable RNA RepeatsR21NS098102 · NINDS · CARNEGIE-MELLON UNIVERSITY · PI LY, DANITH H · 2017 to 2018
$425k
NINDS NIH HHS R21 NS098102
6 · The paper itself

Abstract

An impressive array of antigene approaches has been developed for recognition of double helical DNA over the past three decades; however, few have exploited the 'Watson-Crick' base-pairing rules for establishing sequence-specific recognition. One approach employs peptide nucleic acid as a molecular reagent and strand invasion as a binding mode. However, even with integration of the latest conformationally-preorganized backbone design, such an approach is generally confined to sub-physiological conditions due to the lack of binding energy. Here we report the use of a class of shape-selective, bifacial nucleic acid recognition elements, namely Janus bases, for targeting double helical DNA or RNA. Binding occurs in a highly sequence-specific manner under physiologically relevant conditions. The work may provide a foundation for the design of oligonucleotides for targeting the secondary and tertiary structures of nucleic acid biopolymers.

Identifiers

PMID36789151
PMCPMC9923363

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.