Evidence map›Paper›PMID 36789101›Full record

ArticleProceedings of machine learning research2022

Adaptation of the Independent Metropolis-Hastings Sampler with Normalizing Flow Proposals.

James A Brofos, Marylou Gabrié, Marcus A Brubaker, Roy R Lederman

Abstract read
In one paragraph

Article in Proceedings of machine learning research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

James A BrofosYale University.
Marylou GabriéCDS, New York University, CCM, Flatiron Institute.
Marcus A BrubakerYork University, Vector Institute.
Roy R LedermanYale University.

Funding

Reconstruction of heterogeneous and small macromolecules by cyro-EMR01GM136780 · NIGMS · PRINCETON UNIVERSITY · PI SINGER, AMIT · 2020 to 2023
$1.3M
NIGMS NIH HHS R01 GM136780
6 · The paper itself

Abstract

Markov Chain Monte Carlo (MCMC) methods are a powerful tool for computation with complex probability distributions. However the performance of such methods is critically dependent on properly tuned parameters, most of which are difficult if not impossible to know a priori for a given target distribution. Adaptive MCMC methods aim to address this by allowing the parameters to be updated during sampling based on previous samples from the chain at the expense of requiring a new theoretical analysis to ensure convergence. In this work we extend the convergence theory of adaptive MCMC methods to a new class of methods built on a powerful class of parametric density estimators known as normalizing flows. In particular, we consider an independent Metropolis-Hastings sampler where the proposal distribution is represented by a normalizing flow whose parameters are updated using stochastic gradient descent. We explore the practical performance of this procedure on both synthetic settings and in the analysis of a physical field system, and compare it against both adaptive and non-adaptive MCMC methods.

Identifiers

PMID36789101
PMCPMC9923871

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.