Evidence map›Paper›PMID 36788222›Full record

ArticleNature communications2023

Impact of diet and host genetics on the murine intestinal mycobiome.

Yask Gupta, Anna Lara Ernst, Artem Vorobyev, Foteini Beltsiou, Detlef Zillikens, Katja Bieber, Simone Sanna-Cherchi, Angela M Christiano, Christian D Sadik, Ralf J Ludwig and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Yask Gupta *Lübeck Institute of Experimental Dermatology, University of Lübeck, Lübeck, Germany.
Anna Lara Ernst *Lübeck Institute of Experimental Dermatology, University of Lübeck, Lübeck, Germany.ORCID 0000-0002-5884-9870
Artem Vorobyev *Lübeck Institute of Experimental Dermatology, University of Lübeck, Lübeck, Germany.
Foteini BeltsiouLübeck Institute of Experimental Dermatology, University of Lübeck, Lübeck, Germany.ORCID 0000-0001-8653-4908
Detlef ZillikensDepartment of Dermatology, University of Lübeck, Lübeck, Germany.ORCID 0000-0002-5668-307X
Katja BieberLübeck Institute of Experimental Dermatology, University of Lübeck, Lübeck, Germany.ORCID 0000-0002-3855-6683
Simone Sanna-CherchiDivision of Nephrology, Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-6185-948X
Angela M ChristianoDepartment of Dermatology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-6071-9784
Christian D SadikDepartment of Dermatology, University of Lübeck, Lübeck, Germany.ORCID 0000-0001-6701-048X
Ralf J Ludwig *Lübeck Institute of Experimental Dermatology, University of Lübeck, Lübeck, Germany. ralf.ludwig@uksh.de.ORCID 0000-0002-1394-1737
Tanya Sezin *Department of Dermatology, University of Lübeck, Lübeck, Germany. ts3391@cumc.columbia.edu.ORCID 0000-0001-6349-8852
University of Lübeck · DEColumbia University Irving Medical Center · USUniversitäres Kinderwunschzentrum Lübeck · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian gut is home to a diverse microbial ecosystem, whose composition affects various physiological traits of the host. Next-generation sequencing-based metagenomic approaches demonstrated how the interplay of host genetics, bacteria, and environmental factors shape complex traits and clinical outcomes. However, the role of fungi in these complex interactions remains understudied. Here, using 228 males and 363 females from an advanced-intercross mouse line, we provide evidence that fungi are regulated by host genetics. In addition, we map quantitative trait loci associated with various fungal species to single genes in mice using whole genome sequencing and genotyping. Moreover, we show that diet and its' interaction with host genetics alter the composition of fungi in outbred mice, and identify fungal indicator species associated with different dietary regimes. Collectively, in this work, we uncover an association of the intestinal fungal community with host genetics and a regulatory role of diet in this ecological niche.

Indexed as

MycobiomeAnimalsBacteriaDietEcosystemFemaleFungiMaleMammalsMiceQuantitative Trait Loci

Identifiers

PMID36788222
PMCPMC9929102
OpenAlexW4320725617

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.