Evidence map›Paper›PMID 36787085›Full record

ArticleBiochemical genetics2023

Integrative analyses of RNA-seq and ChIP-seq Reveal MITF as a Target Gene of TFPI-2 in MDA231 Cells.

Guangli Wang, Gaofeng Zhang, Ningxia Zhu, Chunjiang Zhu, Mafei Kang, Guidan Zuo, Zhijie Niu, Wei Ye, Baodong Tian, Rui Cai

Abstract read
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In one paragraph

Article in Biochemical genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Guangli Wang *Department of Genetics and Precision Medicine Laboratory, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China. lily20211021@163.com.
Gaofeng Zhang *Department of Radiation Oncology, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Ningxia ZhuDepartment of Pathology and Physiopathology, Guilin Medical University, Guilin, 541004, Guangxi, People's Republic of China. znx103@163.com.
Chunjiang ZhuDepartment of Genetics and Precision Medicine Laboratory, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Mafei KangDepartment of Medical Oncology, The Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Guidan ZuoDepartment of Radiation Oncology, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Zhijie NiuDepartment of Radiation Oncology, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Wei YeDepartment of Genetics and Precision Medicine Laboratory, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Baodong TianDepartment of Genetics and Precision Medicine Laboratory, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Rui CaiDepartment of Radiation Oncology, Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, People's Republic of China.
Guilin Medical University · CN

Funding

The Guangxi Youth Science Foundation grant: 2018JJB140005
6 · The paper itself

Abstract

Breast cancer is the most prevalent cancer in female patients worldwide. Tissue factor pathway inhibitor 2 (TFPI-2) is identified as an important tumor suppressor in various cancers. Recent studies have shown that TFPI-2 translocates into the nucleus, where it modulates the transcription of the matrix metalloproteinase-2 (MMP-2) gene. However, its biological role and molecular mechanisms in the progression of breast cancer remain unclear. In this study, we identified 5125 differentially expressed genes (DEGs) from RNA sequencing (RNA-seq) in TFPI-2-overexpressing MDA231 cells compared with control cells. Gene ontology and Kyoto encyclopedia of genes and genomes (KEGG) analysis shown that cell cycle, cell differentiation, proteoglycans in cancer, and pathways associated with cancer were highly enriched in downregulated DEGs. Integration of the RNA-seq and ChIP-sequencing (ChIP-seq) data identified 73 genes directly controlled by TFPI-2 in MDA231 cells. Among them, melanocyte inducing transcription factor (MITF) gene expression was repressed by TFPI-2, which was further verified by a luciferase reporter assay and ChIP-quantitative PCR. Our study provides evidence of a novel role of TFPI-2 in human breast cancer involving targeting of the MITF.

Indexed as

Breast NeoplasmsMatrix Metalloproteinase 2Chromatin Immunoprecipitation SequencingFemaleGlycoproteinsHumansMicrophthalmia-Associated Transcription FactorRNA-SeqGlycoproteinsMatrix Metalloproteinase 2Microphthalmia-Associated Transcription FactorMITF protein, humantissue-factor-pathway inhibitor 2ChIP-seqMITFTarget geneTFPI-2

Identifiers

PMID36787085
OpenAlexW4320709697

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.