Evidence map›Paper›PMID 36786868›Full record

ArticleArchives of virology2023

Prevalence and genetic diversity in bovine parechovirus infecting Japanese cattle.

Mami Oba, Shiho Obinata, Hitoshi Takemae, Kei Kazama, Masashi Oguro, Kazuki Ito, Seiichi Kakinuma, Hiroho Ishida, Hironobu Murakami, Shoichi Sakaguchi and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identification of a new bovine picornavirus (Journal of veterinary science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Mami ObaCenter for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, 183-8509, Fuchu, Tokyo, Japan.
Shiho ObinataSchool of Veterinary Medicine, Azabu University, 252-5201, Sagamihara, Kanagawa, Japan.
Hitoshi TakemaeCenter for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, 183-8509, Fuchu, Tokyo, Japan.
Kei KazamaSchool of Veterinary Medicine, Azabu University, 252-5201, Sagamihara, Kanagawa, Japan.
Masashi OguroMYDS Corporation, 378-0127, Numata, Gunma, Japan.
Kazuki ItoVeterinary Clinic, Saitama Agricultural Mutual Aid Association, 360-0843, Kumagaya, Saitama, Japan.
Seiichi KakinumaKakinuma Veterinary Hospital, Kodama-chou, 367-0212, Kodama, Honjou, Saitama, Japan.
Hiroho IshidaSchool of Veterinary Medicine, Azabu University, 252-5201, Sagamihara, Kanagawa, Japan.
Hironobu MurakamiSchool of Veterinary Medicine, Azabu University, 252-5201, Sagamihara, Kanagawa, Japan.
Shoichi SakaguchiDepartment of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, 569-8686, Osaka, Japan.
Tetsuya MizutaniCenter for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, 183-8509, Fuchu, Tokyo, Japan.
Makoto NagaiCenter for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, 183-8509, Fuchu, Tokyo, Japan. m-nagai@azabu-u.ac.jp.ORCID http://orcid.org/0000-0001-5884-620X
Azabu University · JPTokyo University of Agriculture and Technology · JPOsaka University of Pharmaceutical Sciences · JPVeterinary Medical Center · JP

Funding

JSPS KAKENHI 21K05947Livestock Promotional Subsidy from the Japan Racing Association Livestock Promotional Subsidy from the Japan Racing Association
6 · The paper itself

Abstract

The first bovine parechovirus (Bo_ParV) was reported in 2021, and currently, only two nearly complete genome sequences of Bo_ParV are available. In this study, we detected Bo_ParVs in 10 out of 158 bovine fecal samples tested using real-time RT-PCR, and Bo_ParVs were isolated from three of these samples using MA104 cells. Analysis of the P1 region revealed that Bo_ParVs shared high pairwise amino acid sequence similarity (≥ 95.7% identity), suggesting antigenic similarity among Bo_ParVs, whereas nucleotide sequence identity values (≥ 84.8%) indicated more variability. A recombination breakpoint was identified in the 2B region, which may influence the evolution of this virus.

Indexed as

CattleParechovirusAnimalsGenetic VariationGenotypePhylogenyPrevalenceBovine parechovirusReal-time RT-PCRRecombination eventVirus isolationWhole genome analysis

Identifiers

PMID36786868
OpenAlexW4320709645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.