Evidence map›Paper›PMID 36782149›Full record

ArticleBMC biology2023

XY sex determination in a cnidarian.

Ruoxu Chen, Steven M Sanders, Zhiwei Ma, Justin Paschall, E Sally Chang, Brooke M Riscoe, Christine E Schnitzler, Andreas D Baxevanis, Matthew L Nicotra

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Sex Determination in Sponges.Molecular reproduction and development · 2026
    Review
  3. A chromosome-level genome assembly for the colonial marine hydrozoanbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. The genome of the colonial hydroidGenome research · 2024
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ruoxu ChenSchool of Medicine, Tsinghua University, Beijing, China.
Steven M SandersStarzl Transplantation Institute, Department of Surgery, University of Pittsburgh, Pittsburgh, PA, USA.
Zhiwei MaStarzl Transplantation Institute, Department of Surgery, University of Pittsburgh, Pittsburgh, PA, USA.
Justin PaschallComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
E Sally ChangComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Brooke M RiscoeStarzl Transplantation Institute, Department of Surgery, University of Pittsburgh, Pittsburgh, PA, USA.
Christine E SchnitzlerWhitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, USA.
Andreas D BaxevanisComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Matthew L NicotraStarzl Transplantation Institute, Department of Surgery, University of Pittsburgh, Pittsburgh, PA, USA. matthew.nicotra@pitt.edu.ORCID 0000-0001-5361-8398
University of Pittsburgh · USNational Institutes of Health · USWhitney Museum of American Art · US

Funding

Phylogenomic Studies on the Evolution of Morphological ComplexityZIAHG000140 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAXEVANIS, ANDREAS · 2009 to 2025
$11.4M
Interdisciplinary Training in Transplantation BiologyT32AI074490 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Angus W Thomson · 2007 to 2026
$4.2M
Characterizing the molecular regulators of stem cell populations during homeostasis and regeneration in Hydractinia, an emerging cnidarianresearch organism; Administrative SupplementsR35GM138156 · NIGMS · UNIVERSITY OF FLORIDA · PI SCHNITZLER, CHRISTINE · 2020 to 2024
$1.9M
Structural /Phylogenetic Studies of Homeodomain ProteinZ01HG000140 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAXEVANIS, ANDREAS D. · 1999 to 2008
$1.4M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
GAP FILLING IN CHROMOSOME SPECIFIC COSMID CONTIG MAPSF05HG000140 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KALACHIKOV, SERGEI M · 1995 to 1995
–
Intramural NIH HHS Z01 HG000140Intramural NIH HHS ZIA HG000140NHGRI NIH HHS F05 HG000140NIAID NIH HHS T32 AI074490NIGMS NIH HHS R35 GM138156NIH HHS S10 OD028483
6 · The paper itself

Abstract

backgroundSex determination occurs across animal species, but most of our knowledge about its mechanisms comes from only a handful of bilaterian taxa. This limits our ability to infer the evolutionary history of sex determination within animals.

resultsIn this study, we generated a linkage map of the genome of the colonial cnidarian Hydractinia symbiolongicarpus and used it to demonstrate that this species has an XX/XY sex determination system. We demonstrate that the X and Y chromosomes have pseudoautosomal and non-recombining regions. We then use the linkage map and a method based on the depth of sequencing coverage to identify genes encoded in the non-recombining region and show that many of them have male gonad-specific expression. In addition, we demonstrate that recombination rates are enhanced in the female genome and that the haploid chromosome number in Hydractinia is n = 15.

conclusionsThese findings establish Hydractinia as a tractable non-bilaterian model system for the study of sex determination and the evolution of sex chromosomes.

Indexed as

HydrozoaSex ChromosomesAnimalsChromosome MappingEvolution, MolecularFemaleMaleY ChromosomeDepth of coverageHydractiniaLinkage mapPseudoautosomal regionPseudo-testcrossSex determination

Identifiers

PMID36782149
PMCPMC9926710
OpenAlexW4320481351

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.