Evidence map›Paper›PMID 36782130›Full record

ArticleBMC plant biology2023

Variation in mitogenome structural conformation in wild and cultivated lineages of sorghum corresponds with domestication history and plastome evolution.

Shuo Zhang, Jie Wang, Wenchuang He, Shenglong Kan, Xuezhu Liao, David R Jordan, Emma S Mace, Yongfu Tao, Alan W Cruickshank, Robert Klein and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
23.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Assembly and Characterization of the Complete Mitochondrial Genome ofInternational journal of molecular sciences · 2026
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  6. Newly assembled mitochondrial genomes ofFrontiers in plant science · 2026
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  10. The cytonuclear interactions during grapevine domestication.Journal of integrative plant biology · 2025
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  12. Characterization of the Mitochondrial Genome ofPlants (Basel, Switzerland) · 2025
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  13. Article
  14. Article
  15. Article
  16. Super-large record-breaking mitochondrial genome ofFrontiers in plant science · 2025
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  17. Article
  18. Unveiling the complete organelle genomes ofFrontiers in plant science · 2025
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  19. Comparative Analyses of the Complete Mitogenomes of TwoInternational journal of molecular sciences · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Shuo ZhangNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Hubei, Wuhan, 430070, China.
Jie WangShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Guangdong, Shenzhen, 518120, China.
Wenchuang HeShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Guangdong, Shenzhen, 518120, China.
Shenglong KanShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Guangdong, Shenzhen, 518120, China.
Xuezhu LiaoShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Guangdong, Shenzhen, 518120, China.
David R JordanQueensland Alliance for Agriculture and Food Innovation (QAAFI), Hermitage Research Facility, The University of Queensland, Warwick, Queensland, 4370, Australia.
Emma S MaceQueensland Alliance for Agriculture and Food Innovation (QAAFI), Hermitage Research Facility, The University of Queensland, Warwick, Queensland, 4370, Australia.
Yongfu TaoQueensland Alliance for Agriculture and Food Innovation (QAAFI), Hermitage Research Facility, The University of Queensland, Warwick, Queensland, 4370, Australia.
Alan W CruickshankDepartment of Agriculture and Fisheries (DAF), Agri-Science Queensland, Hermitage Research Facility, Warwick, Queensland, 4370, Australia.
Robert KleinSouthern Plains Agricultural Research Center, USDA-ARS, College Station, Texas, 77845, USA.
Daojun YuanNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Hubei, Wuhan, 430070, China.
Luke R TembrockDepartment of Agricultural Biology, Colorado State University, Fort Collins, Colorado, 80523, USA. luke.tembrock@colostate.edu.
Zhiqiang WuShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Guangdong, Shenzhen, 518120, China. wuzhiqiang@caas.cn.
Agricultural Genomics Institute at Shenzhen · CNThe University of Queensland · AUChinese Academy of Agricultural Sciences · CNColorado State University · USHuazhong Agricultural University · CNSouthern Plains Agricultural Research Center · US

Funding

Chinese Academy of Agricultural Sciences Elite Youth Program 110243160001007National Natural Science Foundation of China 31970244Science, Technology, and Innovation Commission of Shenzhen Municipality RCYX20200714114538196
6 · The paper itself

Abstract

backgroundMitochondria are organelles within eukaryotic cells that are central to the metabolic processes of cellular respiration and ATP production. However, the evolution of mitochondrial genomes (mitogenomes) in plants is virtually unknown compared to animal mitogenomes or plant plastids, due to complex structural variation and long stretches of repetitive DNA making accurate genome assembly more challenging. Comparing the structural and sequence differences of organellar genomes within and between sorghum species is an essential step in understanding evolutionary processes such as organellar sequence transfer to the nuclear genome as well as improving agronomic traits in sorghum related to cellular metabolism.

resultsHere, we assembled seven sorghum mitochondrial and plastid genomes and resolved reticulated mitogenome structures with multilinked relationships that could be grouped into three structural conformations that differ in the content of repeats and genes by contig. The grouping of these mitogenome structural types reflects the two domestication events for sorghum in east and west Africa.

conclusionsWe report seven mitogenomes of sorghum from different cultivars and wild sources. The assembly method used here will be helpful in resolving complex genomic structures in other plant species. Our findings give new insights into the structure of sorghum mitogenomes that provides an important foundation for future research into the improvement of sorghum traits related to cellular respiration, cytonuclear incompatibly, and disease resistance.

Indexed as

Genome, MitochondrialSorghumCell NucleusDomesticationEvolution, MolecularGenome, PlantPhylogenyPlantsChloroplastCrop improvementGrainsIntracellular transferMitochondrion

Identifiers

PMID36782130
PMCPMC9926791
OpenAlexW4320482288

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.