Evidence map›Paper›PMID 36782050›Full record

ArticleNature structural & molecular biology2023

Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.

Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake, Ignacia Echeverria, Jen Chen, Ernst H Pulido, Andrej Sali, Nevan J Krogan and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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  16. Inhibitors of the Thioesterase Activity ofACS infectious diseases · 2024
    Article
  17. Article
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  19. MedComm · 2023
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sun Kyung Kim *Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
Miles Sasha Dickinson *Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
Janet Finer-MooreDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
Ziqiang GuanDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0002-8082-3423
Robyn M KaakeGladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0002-8341-3067
Ignacia EcheverriaDepartment of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.
Jen ChenDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
Ernst H PulidoGladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0002-3616-9743
Andrej SaliDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0435-6197
Nevan J KroganGladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0003-4902-337X
Oren S RosenbergDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA. Oren.Rosenberg@ucsf.edu.ORCID 0000-0002-5736-4388
Robert M StroudDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA. stroud@msg.ucsf.edu.ORCID 0000-0003-2083-5665
University of California, San Francisco · USGladstone Institutes · USDuke Medical Center · US

Funding

RESEARCH PROJECT 2U19AI135990 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nevan J Krogan · 2018 to 2026
$21.4M
Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SACCHETTINI, JAMES C · 2012 to 2022
$19.8M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
STRUCTURE/FUNCTION OF PROTEINS AT MOLECULAR LEVELR01GM024485 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 1985 to 2024
$7.5M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
Molecular Basis for Transmembrane Conduction & SignalingR37GM024485 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2007 to 2016
$4.7M
Molecular Biophysics Training Program at StanfordT32GM136568 · NIGMS · STANFORD UNIVERSITY · PI Zev Bryant, KERWYN C. HUANG · 2021 to 2026
$3.7M
Adaptive alterations of lipids in mitis group streptococciR01AI148366 · NIAID · UNIVERSITY OF TEXAS DALLAS · PI GUAN, ZIQIANG, PALMER, KELLI LEA · 2020 to 2024
$2.5M
Protein secretion in bacterial pathogensR01AI128214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, CAROL ANNE · 2017 to 2021
$2.0M
NIAID NIH HHS P01 AI095208NIAID NIH HHS R01 AI128214NIAID NIH HHS R01 AI148366NIAID NIH HHS U19 AI135990NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM024485NIGMS NIH HHS R01 GM083960NIGMS NIH HHS R37 GM024485NIGMS NIH HHS T32 GM136568
6 · The paper itself

Abstract

The mycolic acid layer of the Mycobacterium tuberculosis cell wall is essential for viability and virulence, and the enzymes responsible for its synthesis are targets for antimycobacterial drug development. Polyketide synthase 13 (Pks13) is a module encoding several enzymatic and transport functions that carries out the condensation of two different long-chain fatty acids to produce mycolic acids. We determined structures by cryogenic-electron microscopy of dimeric multi-enzyme Pks13 purified from mycobacteria under normal growth conditions, captured with native substrates. Structures define the ketosynthase (KS), linker and acyl transferase (AT) domains at 1.8 Å resolution and two alternative locations of the N-terminal acyl carrier protein. These structures suggest intermediate states on the pathway for substrate delivery to the KS domain. Other domains, visible at lower resolution, are flexible relative to the KS-AT core. The chemical structures of three bound endogenous long-chain fatty acid substrates were determined by electrospray ionization mass spectrometry.

Indexed as

Mycobacterium tuberculosisPolyketide SynthasesFatty AcidsMycolic AcidsFatty AcidsMycolic AcidsPolyketide Synthases

Identifiers

PMID36782050
PMCPMC10312659
OpenAlexW4320486050

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.