Evidence map›Paper›PMID 36782027›Full record

ArticleNature microbiology2023

Restriction endonuclease cleavage of phage DNA enables resuscitation from Cas13-induced bacterial dormancy.

Madison C Williams, Alexandra E Reker, Shally R Margolis, Jingqiu Liao, Martin Wiedmann, Enrique R Rojas, Alexander J Meeske

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

  1. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
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  12. Review
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  14. Article
  15. Diversity and abundance of ring nucleases in type III CRISPR-Cas loci.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  16. Systematic functional assessment of anti-phage systems in their native host.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  17. Article
  18. Article
  19. Phages produce persisters.Microbial biotechnology · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Madison C Williams *Department of Microbiology, University of Washington, Seattle, WA, USA.ORCID 0000-0002-8340-4443
Alexandra E Reker *Department of Microbiology, University of Washington, Seattle, WA, USA.
Shally R MargolisDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Jingqiu LiaoDepartment of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA.ORCID 0000-0002-2579-8157
Martin WiedmannDepartment of Food Science, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-4168-5662
Enrique R RojasDepartment of Biology, New York University, New York, NY, USA.
Alexander J MeeskeDepartment of Microbiology, University of Washington, Seattle, WA, USA. meeske@uw.edu.ORCID 0000-0003-3878-531X
University of Washington · USCornell University · USNew York University · USVirginia Tech · US

Funding

CRISPR-Cas13 immunity in Listeria seeligeriR35GM142460 · NIGMS · UNIVERSITY OF WASHINGTON · PI Alexander Jacob Meeske · 2021 to 2026
$2.7M
Exploring mechanical mechanisms of antibiotic resistanceR35GM143057 · NIGMS · NEW YORK UNIVERSITY · PI ROJAS, ENRIQUE · 2021 to 2025
$1.9M
Azure Sapphire BioimagerS10OD026741 · OD · UNIVERSITY OF WASHINGTON · PI SMITH, JASON G · 2019 to 2019
$76k
NIGMS NIH HHS R35 GM142460NIGMS NIH HHS R35 GM143057NIH HHS S10 OD026741
6 · The paper itself

Abstract

Type VI CRISPR systems protect against phage infection using the RNA-guided nuclease Cas13 to recognize viral messenger RNA. Upon target recognition, Cas13 cleaves phage and host transcripts non-specifically, leading to cell dormancy that is incompatible with phage propagation. However, whether and how infected cells recover from dormancy is unclear. Here we show that type VI CRISPR and DNA-cleaving restriction-modification (RM) systems frequently co-occur and synergize to clear phage infections and resuscitate cells. In the natural type VI CRISPR host Listeria seeligeri, we show that RM cleaves the phage genome, thus removing the source of phage transcripts and enabling cells to recover from Cas13-induced cellular dormancy. We find that phage infections are neutralized more effectively when Cas13 and RM systems operate together. Our work reveals that type VI CRISPR immunity is cell-autonomous and non-abortive when paired with RM, and hints at other synergistic roles for the diverse host-directed immune systems in bacteria.

Indexed as

BacteriophagesBacteriaCRISPR-Cas SystemsDNADNA Restriction EnzymesDNA Restriction-Modification EnzymesRNA, ViralDNADNA Restriction EnzymesDNA Restriction-Modification EnzymesRNA, Viral

Identifiers

PMID36782027
PMCPMC9992242
OpenAlexW4320486684

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.