Evidence map›Paper›PMID 36781861›Full record

ArticleNature communications2023

Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity.

Yu H Sun, Hongxiao Cui, Chi Song, Jiafei Teng Shen, Xiaoyu Zhuo, Ruoqiao Huiyi Wang, Xiaohui Yu, Rudo Ndamba, Qian Mu, Hanwen Gu and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Genetic variants of thePrzeglad menopauzalny = Menopause review · 2024
    Article
  6. Article
  7. Enigmatic Pachytene PIWI-Interacting RNAs.Genome biology and evolution · 2024
    Review
  8. Review
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 3 countries.

Yu H Sun *Center for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID 0000-0003-0333-2898
Hongxiao Cui *College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.ORCID 0000-0002-3398-0223
Chi Song *College of Public Health, Division of Biostatistics, The Ohio State University, Columbus, OH, 43210, USA.
Jiafei Teng Shen *International Institutes of Medicine, The Fourth Affiliated Hospital, Zhejiang University School of Medicine, Yiwu, Zhejiang, 322000, China.
Xiaoyu ZhuoDepartment of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, 63110, USA.ORCID 0000-0002-1400-5609
Ruoqiao Huiyi WangCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID 0000-0003-2013-4850
Xiaohui YuCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Rudo NdambaCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Qian MuCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Hanwen GuCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Duolin WangCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Gayathri Guru MurthyCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID 0000-0001-6150-5764
Pidong LiGrandomics Biosciences Co., Ltd, Beijing, 102206, China.ORCID 0000-0001-8509-4648
Fan LiangGrandomics Biosciences Co., Ltd, Beijing, 102206, China.ORCID 0000-0003-1556-1436
Lei LiuGrandomics Biosciences Co., Ltd, Beijing, 102206, China.
Qing TaoGrandomics Biosciences Co., Ltd, Beijing, 102206, China.
Ying WangDepartment of Animal Science, University of California, Davis, CA, 95616, USA.
Sara OrlowskiDepartment of Poultry Science, University of Arkansas, Fayetteville, AR, 72701, USA.
Qi XuDepartment of Animal Science, McGill University, Quebec, H9X 3V9, Canada.ORCID 0000-0003-2791-0429
Huaijun ZhouDepartment of Animal Science, University of California, Davis, CA, 95616, USA.ORCID 0000-0001-6023-9521
Jarra JagneAnimal Health Diagnostic Center, Cornell University College of Veterinary Medicine, Ithaca, NY, 14850, USA.
Omer GokcumenDepartment of Biological Sciences, University at Buffalo, State University of New York, Buffalo, NY, 14260, USA.ORCID 0000-0003-4371-679X
Nick AnthonyDepartment of Poultry Science, University of Arkansas, Fayetteville, AR, 72701, USA.
Xin ZhaoDepartment of Animal Science, McGill University, Quebec, H9X 3V9, Canada. xin.zhao@mcgill.ca.ORCID 0000-0002-1078-7332
Xin Zhiguo LiCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA. Xin_Li@urmc.rochester.edu.ORCID 0000-0001-6803-4600
University of Rochester Medical Center · USBioscience (China) · CNMcGill University · CANorthwest A&F University · CNUniversity of Arkansas at Fayetteville · USUniversity of California, Davis · USCornell University · USThe Ohio State University · USUniversity at Buffalo, State University of New York · USWashington University in St. Louis · USZhejiang University · CN

Funding

Define piRNA biogenesis and function in miceR35GM128782 · NIGMS · UNIVERSITY OF ROCHESTER · PI LI, XIN · 2018 to 2022
$2.0M
NIGMS NIH HHS R35 GM128782
6 · The paper itself

Abstract

Unlike PIWI-interacting RNA (piRNA) in other species that mostly target transposable elements (TEs), >80% of piRNAs in adult mammalian testes lack obvious targets. However, mammalian piRNA sequences and piRNA-producing loci evolve more rapidly than the rest of the genome for unknown reasons. Here, through comparative studies of chickens, ducks, mice, and humans, as well as long-read nanopore sequencing on diverse chicken breeds, we find that piRNA loci across amniotes experience: (1) a high local mutation rate of structural variations (SVs, mutations ≥ 50 bp in size); (2) positive selection to suppress young and actively mobilizing TEs commencing at the pachytene stage of meiosis during germ cell development; and (3) negative selection to purge deleterious SV hotspots. Our results indicate that genetic instability at pachytene piRNA loci, while producing certain pathogenic SVs, also protects genome integrity against TE mobilization by driving the formation of rapid-evolving piRNA sequences.

Indexed as

ChickensGerm CellsAnimalsDNA Transposable ElementsHumansMaleMammalsMicePiwi-Interacting RNARNA, Small InterferingTestisDNA Transposable ElementsPiwi-Interacting RNARNA, Small Interfering

Identifiers

PMID36781861
PMCPMC9925758
OpenAlexW4320484700

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.