ArticlebioRxiv : the preprint server for biology2023
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution.
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Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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50 authors at 19 institutions in 9 countries.
Xuehuan FengUniversity of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.ORCID 0000-0002-0732-9322
Jinfang ZhengUniversity of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.
Iker IrisarriUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0002-3628-1137
Huihui YuUniversity of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE 68588, USA.ORCID 0000-0003-2725-1937
Bo ZhengUniversity of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.
Zahin AliNanyang Technological University, School of Biological Sciences, 60 Nanyang Drive, Singapore 637551, Singapore.
Sophie de VriesUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0002-5267-8935
Jean KellerLaboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, 31326, France.ORCID 0000-0002-5198-0331
Janine M R Fürst-JansenUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0002-5269-8725
Armin DadrasUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0001-7649-2388
Jaccoline M S ZegersUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0003-0042-8923
Tim P RiesebergUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0003-3548-8475
Amra Dhabalia AshokUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0001-5787-6941
Tatyana DarienkoUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0002-1957-0076
Maaike J BierenbroodspotUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0002-4460-3394
Lydia GramzowUniversity of Jena, Matthias Schleiden Institute / Genetics, 07743, Jena, Germany.ORCID 0000-0003-1919-6077
Romy PetrollPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID 0000-0003-0165-982X
Fabian B HaasPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID 0000-0002-7711-5282
Noe Fernandez-PozoPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID 0000-0002-6489-5566
Orestis NousiasUniversity of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.ORCID 0000-0001-6644-6599
Tang LiUniversity of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.
Elisabeth FitzekComputational Biology, Department of Biology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.ORCID 0000-0001-9423-2993
W Scott GrayburnNorthern Illinois University, Molecular Core Lab, Department of Biological Sciences, DeKalb, IL 60115, USA.ORCID 0000-0003-0276-6053
Nina RittmeierUniversity of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Sternwartestraße 15, A-6020 Innsbruck, Austria.
Charlotte PermannUniversity of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Sternwartestraße 15, A-6020 Innsbruck, Austria.
Florian RümplerUniversity of Jena, Matthias Schleiden Institute / Genetics, 07743, Jena, Germany.ORCID 0000-0003-4986-2595
John M ArchibaldDalhousie University, Department of Biochemistry and Molecular Biology, 5850 College Street, Halifax NS B3H 4R2, Canada.ORCID 0000-0001-7255-780X
Günter TheißenUniversity of Jena, Matthias Schleiden Institute / Genetics, 07743, Jena, Germany.ORCID 0000-0003-4854-8692
Jeffrey P MowerUniversity of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE 68588, USA.ORCID 0000-0002-1501-5809
Maike LorenzUniversity of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Experimental Phycology and Culture Collection of Algae at Goettingen University (EPSAG), Nikolausberger Weg 18, 37073 Goettingen, Germany.ORCID 0000-0002-2277-3077
Henrik BuschmannUniversity of Applied Sciences Mittweida, Faculty of Applied Computer Sciences and Biosciences, Section Biotechnology and Chemistry, Molecular Biotechnology, Technikumplatz 17, 09648 Mittweida, Germany.ORCID 0000-0003-3022-6150
Klaus von SchwartzenbergUniversität Hamburg, Institute of Plant Science and Microbiology, Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Ohnhorststr. 18, 22609, Hamburg, Germany.ORCID 0000-0002-2273-9960
Lori BostonGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Richard D HayesDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0002-5236-7918
Chris DaumDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0003-3895-5892
Kerrie BarryDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0002-8999-6785
Igor V GrigorievDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0002-3136-8903
Xiyin WangNorth China University of Science and Technology.
Fay-Wei LiBoyce Thompson Institute, Ithaca, NY, USA.ORCID 0000-0002-0076-0152
Stefan A RensingPlant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.ORCID 0000-0002-0225-873X
Julius Ben AriThe Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot 7610000, Israel.
Noa KerenThe Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot 7610000, Israel.
Assaf MosqunaThe Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot 7610000, Israel.ORCID 0000-0003-0467-9287
Andreas HolzingerUniversity of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Sternwartestraße 15, A-6020 Innsbruck, Austria.ORCID 0000-0002-7745-3978
Pierre-Marc DelauxLaboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, 31326, France.ORCID 0000-0002-6211-157X
Chi ZhangUniversity of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE 68588, USA.ORCID 0000-0002-1827-8137
Jinling HuangState Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China.ORCID 0000-0003-4893-4171
Marek MutwilNanyang Technological University, School of Biological Sciences, 60 Nanyang Drive, Singapore 637551, Singapore.ORCID 0000-0002-7848-0126
Jan de VriesUniversity of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.ORCID 0000-0003-3507-5195
Yanbin YinUniversity of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.ORCID 0000-0001-7667-881X
University of Göttingen · DEUniversity of Nebraska–Lincoln · USLawrence Berkeley National Laboratory · USHebrew University of Jerusalem · ILPhilipps University of Marburg · DEUniversität Innsbruck · ATCentre National de la Recherche Scientifique · FRNanyang Technological University · SGBielefeld University · DECornell University · USDalhousie University · CAHenan University · CNHochschule Mittweida · DEHudsonAlpha Institute for Biotechnology · USMuseum am Rothenbaum · DENorth China University of Science and Technology · CNNorthern Illinois University · USUniversität Hamburg · DEUniversity of Freiburg · DE
Funding
Exploration of cloud computing for CAZyme researchR01GM140370 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI YIN, YANBIN · 2021 to 2024
$1.5MBioinformatics Discovery of Anti-CRISPR Operons in Human Gut MicrobiomeR21AI171952 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI YIN, YANBIN · 2022 to 2023
$401kNIAID NIH HHS R21 AI171952NIGMS NIH HHS R01 GM140370
Abstract
The filamentous and unicellular algae of the class Zygnematophyceae are the closest algal relatives of land plants. Inferring the properties of the last common ancestor shared by these algae and land plants allows us to identify decisive traits that enabled the conquest of land by plants. We sequenced four genomes of filamentous Zygnematophyceae (three strains of
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