Evidence map›Paper›PMID 36776441›Full record

ArticleBreeding science2022

Seed management using NGS technology to rapidly eliminate a deleterious allele from rice breeder seeds.

Elias G Balimponya, Maria S Dwiyanti, Toshiaki Ito, Shuntaro Sakaguchi, Koichi Yamamori, Yoshitaka Kanaoka, Yohei Koide, Yoshifumi Nagayoshi, Yuji Kishima

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Breeding science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elias G BalimponyaResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Maria S DwiyantiResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Toshiaki ItoResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Shuntaro SakaguchiResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Koichi YamamoriResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Yoshitaka KanaokaResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Yohei KoideResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.
Yoshifumi NagayoshiMiyazaki Comprehensive Agricultural Experiment Station, Miyazaki 880-0212, Japan.
Yuji KishimaResearch Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060‑8589, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spontaneous mutations are stochastic phenomena that occur in every population. However, deleterious mutated allele present in seeds distributed to farmers must be detected and removed. Here, we eliminated undesirable mutations from the parent population in one generation through a strategy based on next-generation sequencing (NGS). This study dealt with a spontaneous albino mutant in the 'Hinohikari' rice variety grown at the Miyazaki Comprehensive Agricultural Experiment Station, Japan. The incidence of albinism in the population was 1.36%. NGS analysis revealed the genomic basis for differences between green and albino phenotypes. Every albino plant had a C insertion in the

Indexed as

albinobreeder seedsnext-generation sequencing (NGS)riceseed management

Identifiers

PMID36776441
PMCPMC9895803

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.