Evidence map›Paper›PMID 36774373›Full record

ArticleNature communications2023

Mechanistic insights into RNA surveillance by the canonical poly(A) polymerase Pla1 of the MTREC complex.

Komal Soni, Anusree Sivadas, Attila Horvath, Nikolay Dobrev, Rippei Hayashi, Leo Kiss, Bernd Simon, Klemens Wild, Irmgard Sinning, Tamás Fischer

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Komal Soni *Heidelberg University Biochemistry Center (BZH), INF 328, D-69120, Heidelberg, Germany.ORCID 0000-0002-7160-3189
Anusree Sivadas *The John Curtin School of Medical Research, The Australian National University, Canberra, ACT 2601, Australia.
Attila HorvathThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT 2601, Australia.ORCID 0000-0002-6127-8925
Nikolay DobrevHeidelberg University Biochemistry Center (BZH), INF 328, D-69120, Heidelberg, Germany.ORCID 0000-0002-8144-4599
Rippei HayashiThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT 2601, Australia.ORCID 0000-0002-5848-9019
Leo KissHeidelberg University Biochemistry Center (BZH), INF 328, D-69120, Heidelberg, Germany.ORCID 0000-0001-8735-1118
Bernd SimonEuropean Molecular Biology Laboratory (EMBL), Meyerhofstr, 1, D-69117, Heidelberg, Germany.ORCID 0000-0003-0164-5516
Klemens WildHeidelberg University Biochemistry Center (BZH), INF 328, D-69120, Heidelberg, Germany.ORCID 0000-0001-9733-8187
Irmgard SinningHeidelberg University Biochemistry Center (BZH), INF 328, D-69120, Heidelberg, Germany. irmi.sinning@bzh.uni-heidelberg.de.ORCID 0000-0001-9127-4477
Tamás FischerThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT 2601, Australia. tamas.fischer@anu.edu.au.ORCID 0000-0002-7996-4042
Heidelberg University · DEAustralian National University · AUEuropean Molecular Biology Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The S. pombe orthologue of the human PAXT connection, Mtl1-Red1 Core (MTREC), is an eleven-subunit complex that targets cryptic unstable transcripts (CUTs) to the nuclear RNA exosome for degradation. It encompasses the canonical poly(A) polymerase Pla1, responsible for polyadenylation of nascent RNA transcripts as part of the cleavage and polyadenylation factor (CPF/CPSF). In this study we identify and characterise the interaction between Pla1 and the MTREC complex core component Red1 and analyse the functional relevance of this interaction in vivo. Our crystal structure of the Pla1-Red1 complex shows that a 58-residue fragment in Red1 binds to the RNA recognition motif domain of Pla1 and tethers it to the MTREC complex. Structure-based Pla1-Red1 interaction mutations show that Pla1, as part of MTREC complex, hyper-adenylates CUTs for their efficient degradation. Interestingly, the Red1-Pla1 interaction is also required for the efficient assembly of the fission yeast facultative heterochromatic islands. Together, our data suggest a complex interplay between the RNA surveillance and 3'-end processing machineries.

Indexed as

Polynucleotide AdenylyltransferaseSchizosaccharomycesSchizosaccharomyces pombe ProteinsCarrier ProteinsCell NucleusRNARNA PrecursorsCarrier ProteinsPolynucleotide AdenylyltransferaseRed1 protein, S pombeRNARNA PrecursorsSchizosaccharomyces pombe Proteins

Identifiers

PMID36774373
PMCPMC9922296
OpenAlexW4320040356

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.