Evidence map›Paper›PMID 36774348›Full record

ArticleNature communications2023

Small molecule inhibitors of 15-PGDH exploit a physiologic induced-fit closing system.

Wei Huang, Hongyun Li, Janna Kiselar, Stephen P Fink, Sagar Regmi, Alexander Day, Yiyuan Yuan, Mark Chance, Joseph M Ready, Sanford D Markowitz and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. 15-PGDH inhibition preserves blood-brain barrier integrity and cognition.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Wei HuangDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH, 44106, USA.ORCID 0000-0003-2097-8148
Hongyun LiDepartment of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA.
Janna KiselarDepartment of Nutrition, Case Western Reserve University, Cleveland, OH, 44106, USA.
Stephen P FinkDepartment of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA.
Sagar RegmiDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH, 44106, USA.ORCID 0000-0001-5104-6613
Alexander DayDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH, 44106, USA.
Yiyuan YuanDepartment of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA.
Mark ChanceDepartment of Nutrition, Case Western Reserve University, Cleveland, OH, 44106, USA.
Joseph M ReadyDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. joseph.ready@utsouthwestern.edu.ORCID 0000-0003-1305-9581
Sanford D MarkowitzDepartment of Medicine, Case Western Reserve University, Cleveland, OH, 44106, USA. sxm10@case.edu.ORCID 0000-0001-5369-5254
Derek J TaylorDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH, 44106, USA. derek.taylor@case.edu.ORCID 0000-0001-9932-1856
Case Western Reserve University · USSouthwestern Medical Center · USUniversity Hospitals Seidman Cancer Center · US

Funding

Targeting 15-PGDH in Colon Cancer Prognosis, Prediction, Treatment and PreventionP50CA150964 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARKOWITZ, SANFORD D. · 2011 to 2022
$24.6M
Targeting EWSR1-FLI1 through Functional, Structural and Chemical ApproachesU54CA231649 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MCKNIGHT, STEVEN L · 2019 to 2019
$10.0M
Chemical, Structural and Cell-Signaling Interrogation of 15-Prostanglandin Dehydrogenase in Tissue Repair and RegenerationRM1GM142002 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MARKOWITZ, SANFORD D., PIEPER, ANDREW A · 2021 to 2025
$6.9M
Targeting 15-Prostaglandin Dehydrogenase (15-PGDH) in Cancer Risk, Prevention, and TreatmentR35CA197442 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARKOWITZ, SANFORD D. · 2017 to 2023
$6.6M
PREDOCTORAL TRAINING PROGRAM IN MOLECULAR THERAPEUTICST32GM008803 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI MIEYAL, JOHN J, NIEMAN, MARVIN THOMAS · 2001 to 2023
$4.2M
Midwest Consortium for High Resolution Cryoelectron MicroscopyU24GM116789 · NIGMS · PURDUE UNIVERSITY · PI BULLITT, ESTHER, DAI, WEI · 2017 to 2021
$3.5M
Structural and molecular determinants of protein phosphatase 2A in Alzheimer's DiseaseR01CA240993 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NARLA, GOUTHAM, TAYLOR, DEREK JAMES · 2019 to 2023
$3.4M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Chemical Inhibitors of 15-prostaglandin dehydrogenase Potentiate Hematopoietic Stem Cell TransplantationR01CA216863 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GERSON, STANTON L., MARKOWITZ, SANFORD D. · 2017 to 2019
$1.9M
Molecular interactions and regulatory events of telomere proteinsR01GM133841 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI TAYLOR, DEREK JAMES · 2019 to 2022
$1.7M
Orbitrap Fusion Lumos Tribrid Mass SpectrometerS10OD026882 · OD · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2019 to 2019
$1.0M
NCI NIH HHS P50 CA150964NCI NIH HHS R01 CA216863NCI NIH HHS R01 CA240993NCI NIH HHS R35 CA197442NCI NIH HHS U54 CA231649NIGMS NIH HHS R01 GM116961NIGMS NIH HHS R01 GM133841NIGMS NIH HHS RM1 GM142002NIGMS NIH HHS T32 GM008803NIGMS NIH HHS U24 GM116789NIH HHS S10 OD026882
6 · The paper itself

Abstract

15-prostaglandin dehydrogenase (15-PGDH) is a negative regulator of tissue stem cells that acts via enzymatic activity of oxidizing and degrading PGE2, and related eicosanoids, that support stem cells during tissue repair. Indeed, inhibiting 15-PGDH markedly accelerates tissue repair in multiple organs. Here we have used cryo-electron microscopy to solve the solution structure of native 15-PGDH and of 15-PGDH individually complexed with two distinct chemical inhibitors. These structures identify key 15-PGDH residues that mediate binding to both classes of inhibitors. Moreover, we identify a dynamic 15-PGDH lid domain that closes around the inhibitors, and that is likely fundamental to the physiologic 15-PGDH enzymatic mechanism. We furthermore identify two key residues, F185 and Y217, that act as hinges to regulate lid closing, and which both inhibitors exploit to capture the lid in the closed conformation, thus explaining their sub-nanomolar binding affinities. These findings provide the basis for further development of 15-PGDH targeted drugs as therapeutics for regenerative medicine.

Indexed as

EicosanoidsHydroxyprostaglandin DehydrogenasesCryoelectron Microscopy15-hydroxyprostaglandin dehydrogenaseEicosanoidsHydroxyprostaglandin Dehydrogenases

Identifiers

PMID36774348
PMCPMC9922282
OpenAlexW4320036337

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.