Evidence map›Paper›PMID 36773166›Full record

ArticleArchives of virology2023

Molecular characterization of horse nettle virus A, a new member of subgroup B of the genus Nepovirus.

Jing Zhou, Xiaojun Hu, Paulo Vieira, Benjamin Atha, Clint McFarland, Joseph A Foster, Oscar P Hurtado-Gonzales

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jing ZhouUSDA-APHIS-PPQ, Plant Germplasm Quarantine Program, Beltsville, MD, 20705, USA.
Xiaojun HuUSDA-APHIS-PPQ, Plant Germplasm Quarantine Program, Beltsville, MD, 20705, USA.
Paulo VieiraUSDA-ARS, Mycology and Nematology Genetic Diversity and Biology Laboratory, Beltsville, MD, 20705, USA.
Benjamin AthaUSDA-APHIS-PPQ, Plant Germplasm Quarantine Program, Beltsville, MD, 20705, USA.
Clint McFarlandUSDA-APHIS-PPQ-Field Operations, Raleigh, NC, 27606, USA.
Joseph A FosterUSDA-APHIS-PPQ, Plant Germplasm Quarantine Program, Beltsville, MD, 20705, USA.
Oscar P Hurtado-GonzalesUSDA-APHIS-PPQ, Plant Germplasm Quarantine Program, Beltsville, MD, 20705, USA. oscar.hurtado-gonzales@usda.gov.ORCID http://orcid.org/0000-0002-9561-7016

Funding

Animal and Plant Health Inspection Service 20-8224-2121 IA
6 · The paper itself

Abstract

A new positive-strand RNA virus was discovered in a horse nettle plant, using high-throughput sequencing (HTS), and its complete genome, consisting of RNA1 and RNA2, which are 7522 and 4710 nucleotides in length, respectively, was characterized. Each genome segment contains a single open reading frame flanked by 5' and 3' untranslated regions (UTRs), followed by a poly(A) tail at the 3' end. The encoded proteins have the highest amino acid sequence identity (55% and 45%) to the polyprotein encoded by RNA1 of tomato black ring virus (TBRV) and RNA2 of potato virus B (PVB), respectively. Its genome organization and phylogenetic relationship to other nepoviruses suggested that this virus is a novel member of subgroup B, and recombination analysis revealed its evolutionary history within the subgroup. These results suggest the new virus, provisionally named "horse nettle virus A", represents a new species within the genus Nepovirus.

Indexed as

NepovirusSolanumAmino Acid SequenceGenome, ViralPhylogenyRNA, ViralRNA, Viral

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.