Evidence map›Paper›PMID 36772796›Full record

ArticleBiophysical journal2023

Detergent headgroups control TolC folding in vitro.

Ayotunde Paul Ikujuni, S Jimmy Budiardjo, Rik Dhar, Joanna S G Slusky

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ayotunde Paul IkujuniDepartment of Molecular Biosciences, The University of Kansas, Lawrence, Kansas.
S Jimmy BudiardjoCenter for Computational Biology, The University of Kansas, Lawrence, Kansas.
Rik DharDepartment of Molecular Biosciences, The University of Kansas, Lawrence, Kansas.
Joanna S G SluskyDepartment of Molecular Biosciences, The University of Kansas, Lawrence, Kansas; Center for Computational Biology, The University of Kansas, Lawrence, Kansas. Electronic address: slusky@ku.edu.
University of Kansas · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Synthetic Chemical Biology CoreP20GM113117 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OROZCO, ROBIN C. · 2016 to 2025
$23.9M
U of Kansas/Haskell Indian Nations U.IRACDA ProjectK12GM063651 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI DE GUZMAN, ROBERTO N · 2002 to 2022
$10.0M
DESIGNED BETA-STRANDS FOR INHIBITING EFFLUX PUMPS AND DISABLING ANTIBIOTIC RESISTANCEDP2GM128201 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI SLUSKY, JOANNA SG · 2017 to 2017
$2.3M
NIGMS NIH HHS DP2 GM128201NIGMS NIH HHS K12 GM063651NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20 GM113117
6 · The paper itself

Abstract

TolC is the trimeric outer membrane component of the efflux pump system in Escherichia coli that is responsible for antibiotic efflux from bacterial cells. Overexpression of efflux pumps has been reported to decrease susceptibility to antibiotics in a variety of bacterial pathogens. Reliable production of membrane proteins allows for the biophysical and structural characterization needed to better understand efflux and for the development of therapeutics. Preparation of recombinant protein for biochemical/structural studies often involves the production of proteins as inclusion body aggregates from which active proteins are recovered. Here, we find that the in vitro folding of TolC into its functional trimeric state from inclusion bodies is dependent on the headgroup composition of detergent micelles used. Nonionic detergent favors the formation of functional trimeric TolC, whereas zwitterionic detergents induce the formation of a non-native, oligomeric TolC fold. We also find that nonionic detergents with shorter alkyl lengths facilitate TolC folding. It remains to be seen whether the charges in lipid headgroups have similar effects on membrane insertion and folding in biological systems.

Indexed as

Escherichia coli ProteinsMembrane Transport ProteinsAnti-Bacterial AgentsBacterial Outer Membrane ProteinsDetergentsEscherichia coliAnti-Bacterial AgentsBacterial Outer Membrane ProteinsDetergentsEscherichia coli ProteinsMembrane Transport Proteins

Identifiers

PMID36772796
PMCPMC10111266
OpenAlexW4319661744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.